Evidence map›Paper›PMID 24861551›Full record

ArticleHuman molecular genetics2014

DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle.

Zizhen Yao, Lauren Snider, Judit Balog, Richard J L F Lemmers, Silvère M Van Der Maarel, Rabi Tawil, Stephen J Tapscott

Registry-linked trialAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06096441 (Clinical and Molecular Characterization of Facioscapulohumeral Muscular Dystrophy), which is not on this map. Cited by 160 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed, 4 pooled it
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06096441 terminatednot on this mapstarted 2021, after this paper: background citation

Clinical and Molecular Characterization of Facioscapulohumeral Muscular Dystrophy (FSHD)

TypeobservationalSponsorNationwide Children's HospitalRan2021 to 2025Enrolled1ConditionsFacio-Scapulo-Humeral Dystrophy
3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 4 syntheses or guidelines pooled it, 218 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Zizhen YaoDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle WA 98109, USA.
Lauren SniderDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle WA 98109, USA.
Judit BalogDepartment of Human Genetics, Leiden University Medical Center, Leiden, ZA 2333, The Netherlands.
Richard J L F LemmersDepartment of Human Genetics, Leiden University Medical Center, Leiden, ZA 2333, The Netherlands.
Silvère M Van Der MaarelDepartment of Human Genetics, Leiden University Medical Center, Leiden, ZA 2333, The Netherlands.
Rabi TawilDepartment of Neurology, University of Rochester Medical Center, Rochester, NY 14642, USA stapscot@fhcrc.org rabi_tawil@urmc.rochester.edu.
Stephen J TapscottDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle WA 98109, USA Department of Neurology, University of Washington, Seattle, WA 98105, USA stapscot@fhcrc.org rabi_tawil@urmc.rochester.edu.
Leiden University Medical Center · NLFred Hutch Cancer Center · USUniversity of Rochester Medical Center · USUniversity of Washington · US

Funding

UNIVERSITY OF ROCHESTER'S RESEARCH ASSOCIATE ORGANIZATIONUL1RR024160 · NCRR · UNIVERSITY OF ROCHESTER · PI PEARSON, THOMAS ARTHUR · 2006 to 2011
$38.7M
The University of Rochester's Clinical and Translational Science InstituteUL1TR000042 · NCATS · UNIVERSITY OF ROCHESTER · PI BENNETT, NANCY M, KIEBURTZ, KARL D. · 2012 to 2015
$14.4M
MYOTONIC DYSTROPHY LOCUS CONTROLR01AR045203 · NIAMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 1998 to 2025
$9.4M
NCATS NIH HHS UL1 TR000042NCRR NIH HHS UL1RR024160NIAMS NIH HHS R01AR045203NINDS NIH HHS P01NS5069539
6 · The paper itself

Abstract

Facioscapulohumeral dystrophy (FSHD) is caused by decreased epigenetic repression of the D4Z4 macrosatellite array and recent studies have shown that this results in the expression of low levels of the DUX4 mRNA in skeletal muscle. Several other mechanisms have been suggested for FSHD pathophysiology and it remains unknown whether DUX4 expression can account for most of the molecular changes seen in FSHD. Since DUX4 is a transcription factor, we used RNA-seq to measure gene expression in muscle cells transduced with DUX4, and in muscle cells and biopsies from control and FSHD individuals. We show that DUX4 target gene expression is the major molecular signature in FSHD muscle together with a gene expression signature consistent with an immune cell infiltration. In addition, one unaffected individual without a known FSHD-causing mutation showed the expression of DUX4 target genes. This individual has a sibling with FSHD and also without a known FSHD-causing mutation, suggesting the presence of an unidentified modifier locus for DUX4 expression and FSHD. These findings demonstrate that the expression of DUX4 accounts for the majority of the gene expression changes in FSHD skeletal muscle together with an immune cell infiltration.

Indexed as

AdultFemaleGene Expression ProfilingGene Expression RegulationHomeodomain ProteinsHumansImmunity, InnateMaleMiddle AgedMuscle, SkeletalMuscular Dystrophy, FacioscapulohumeralSequence Analysis, RNADUX4L1 protein, humanHomeodomain Proteins

Identifiers

PMID24861551
PMCPMC4168822
OpenAlexW2150114997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.