Evidence map›Paper›PMID 24860585›Full record

ArticleFrontiers in plant science2014

Role of the VirA histidine autokinase of Agrobacterium tumefaciens in the initial steps of pathogenesis.

Yi-Han Lin, B Daniel Pierce, Fang Fang, Arlene Wise, Andrew N Binns, David G Lynn

Abstract read
In one paragraph

Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Functional Annotation of Hypothetical Proteins From theBioinformatics and biology insights · 2022
    Article
  4. Mechanistic Analysis of the VirA Sensor Kinase inFrontiers in microbiology · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yi-Han LinLynn Lab, Department of Chemistry and Biology, Emory University Atlanta, GA, USA.
B Daniel PierceLynn Lab, Department of Chemistry and Biology, Emory University Atlanta, GA, USA.
Fang FangLynn Lab, Department of Chemistry and Biology, Emory University Atlanta, GA, USA.
Arlene WiseBinns Lab, Department of Biology, Plant Sciences Institute, University of Pennsylvania Philadelphia, PA, USA.
Andrew N BinnsBinns Lab, Department of Biology, Plant Sciences Institute, University of Pennsylvania Philadelphia, PA, USA.
David G LynnLynn Lab, Department of Chemistry and Biology, Emory University Atlanta, GA, USA.

Funding

IRACDA Fellowships in Research and Science Training (FIRST)K12GM000680 · NIGMS · EMORY UNIVERSITY · PI BROWN, LOU ANN S, MCCARTY, NAEL A · 2000 to 2024
$41.2M
NIGMS NIH HHS K12 GM000680
6 · The paper itself

Abstract

Histidine kinases serve as critical environmental sensing modules, and despite their designation as simple two-component modules, their functional roles are remarkably diverse. In Agrobacterium tumefaciens pathogenesis, VirA serves with VirG as the initiating sensor/transcriptional activator for inter-kingdom gene transfer and transformation of higher plants. Through responses to three separate signal inputs, low pH, sugars, and phenols, A. tumefaciens commits to pathogenesis in virtually all flowering plants. However, how these three signals are integrated to regulate the response and why these signals might be diagnostic for susceptible cells across such a broad host-range remains poorly understood. Using a homology model of the VirA linker region, we provide evidence for coordinated long-range transmission of inputs perceived both outside and inside the cell through the creation of targeted VirA truncations. Further, our evidence is consistent with signal inputs weakening associations between VirA domains to position the active site histidine for phosphate transfer. This mechanism requires long-range regulation of inter-domain stability and the transmission of input signals through a common integrating domain for VirA signal transduction.

Indexed as

AgrobacteriumGAF domainpathogenesissignal transductiontwo-component systemVirA

Identifiers

PMID24860585
PMCPMC4030172

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.