Evidence map›Paper›PMID 24860553›Full record

ArticleFrontiers in microbiology2014

Various pAQU plasmids possibly contribute to disseminate tetracycline resistance gene tet(M) among marine bacterial community.

Lisa Nonaka, Fumito Maruyama, Yuki Onishi, Takeshi Kobayashi, Yoshitoshi Ogura, Tetsuya Hayashi, Satoru Suzuki, Michiaki Masuda

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 45 citations in OpenAlex.

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  16. Co-occurrence of colistin-resistance genes mcr-1 and mcr-3 among multidrug-resistant Escherichia coli isolated from cattle, Spain, September 2015.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Lisa NonakaDepartment of Microbiology, Dokkyo Medical University School of Medicine Mibu, Tochigi, Japan.
Fumito MaruyamaGraduate School of Medical and Dental Sciences, Tokyo Medical and Dental University Bunkyo-ku, Tokyo, Japan.
Yuki OnishiDivision of Aquatic Biosciences, Center for Marine Environmental Studies, Ehime University Matsuyama, Ehime, Japan.
Takeshi KobayashiDepartment of Ophthalmology and Regenerative Medicine, Ehime University Graduate School of Medicine Shitsukawa, Toon, Ehime, Japan.
Yoshitoshi OguraDivision of Microbial Genomics, Department of Genomics and Bioenvironmental Science, Frontier Science Research Centre, University of Miyazaki Kiyotake, Miyazaki, Japan.
Tetsuya HayashiDivision of Microbial Genomics, Department of Genomics and Bioenvironmental Science, Frontier Science Research Centre, University of Miyazaki Kiyotake, Miyazaki, Japan.
Satoru SuzukiDivision of Aquatic Biosciences, Center for Marine Environmental Studies, Ehime University Matsuyama, Ehime, Japan.
Michiaki MasudaDepartment of Microbiology, Dokkyo Medical University School of Medicine Mibu, Tochigi, Japan.
Ehime University · JPDokkyo Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Emergence of antibiotic-resistant bacteria in the aquaculture environment is a significant problem for disease control of cultured fish as well as in human public health. Conjugative mobile genetic elements (MGEs) are involved in dissemination of antibiotic resistance genes (ARGs) among marine bacteria. In the present study, we first designed a PCR targeting traI gene encoding essential relaxase for conjugation. By this new PCR, we demonstrated that five of 83 strains isolated from a coastal aquaculture site had traI-positive MGEs. While one of the five strains that belonged to Shewanella sp. was shown to have an integrative conjugative element of the SXT/R391 family (ICEVchMex-like), the MGEs of the other four strains of Vibrio spp. were shown to have the backbone structure similar to that of previously described in pAQU1. The backbone structure shared by the pAQU1-like plasmids in the four strains corresponded to a ~100-kbp highly conserved region required for replication, partition and conjugative transfer, suggesting that these plasmids constituted "pAQU group." The pAQU group plasmids were shown to be capable of conjugative transfer of tet(M) and other ARGs from the Vibrio strains to E. coli. The pAQU group plasmid in one of the examined strains was designated as pAQU2, and its complete nucleotide sequence was determined and compared with that of pAQU1. The results revealed that pAQU2 contained fewer ARGs than pAQU1 did, and most of the ARGs in both of these plasmids were located in the similar region where multiple transposases were found, suggesting that the ARGs were introduced by several events of DNA transposition into an ancestral plasmid followed by drug selection in the aquaculture site. The results of the present study indicate that the "pAQU group" plasmids may play an important role in dissemination of ARGs in the marine environment.

Indexed as

antimicrobial resistance genesaquaculturepAQU2pAQU groupSXT/R391 ICEstet(M)traItransferable plasmid

Identifiers

PMID24860553
PMCPMC4026752
OpenAlexW1990526385

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.