Evidence map›Paper›PMID 24860167›Full record

ArticleNucleic acids research2014

Divergent LIN28-mRNA associations result in translational suppression upon the initiation of differentiation.

Shen Mynn Tan, Gabriel Altschuler, Tian Yun Zhao, Haw Siang Ang, Henry Yang, Bing Lim, Leah Vardy, Winston Hide, Andrew M Thomson, Ricky R Lareu

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Translational control of stem cell function.Nature reviews. Molecular cell biology · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. MutantEMBO molecular medicine · 2017
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Shen Mynn TanStem Cell and Developmental Biology, Genome Institute of Singapore, Agency for Science Technology and Research (A*STAR), 138672, Singapore Shenmynn.Tan@childrens.harvard.edu.
Gabriel AltschulerDepartment of Biostatistics, Harvard School of Public Health, Boston, MA 02115, USA.
Tian Yun ZhaoInstitute of Medical Biology, A*STAR, 138648, Singapore.
Haw Siang AngCancer Science Institute, National University of Singapore (NUS), 117599, Singapore.
Henry YangCancer Science Institute, National University of Singapore (NUS), 117599, Singapore.
Bing LimStem Cell and Developmental Biology, Genome Institute of Singapore, Agency for Science Technology and Research (A*STAR), 138672, Singapore.
Leah VardyInstitute of Medical Biology, A*STAR, 138648, Singapore.
Winston HideDepartment of Biostatistics, Harvard School of Public Health, Boston, MA 02115, USA whide@hsph.harvard.edu.
Andrew M ThomsonStem Cell and Developmental Biology, Genome Institute of Singapore, Agency for Science Technology and Research (A*STAR), 138672, Singapore.
Ricky R LareuDepartment of Orthopedic Surgery, NUS Tissue Engineering Program, Yong Loo Lin School of Medicine, NUS, 119228, Singapore and School of Pharmacy, CHIRI Biosciences, Curtin University, Western Australia 6102, Australia Ricky.Lareu@curtin.edu.au.
Agency for Science, Technology and Research · SGHarvard University · USNational University Cancer Institute, Singapore · SGNational University of Singapore · SGThe University of Western Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LIN28 function is fundamental to the activity and behavior of human embryonic stem cells (hESCs) and induced pluripotent stem cells. Its main roles in these cell types are the regulation of translational efficiency and let-7 miRNA maturation. However, LIN28-associated mRNA cargo shifting and resultant regulation of translational efficiency upon the initiation of differentiation remain unknown. An RNA-immunoprecipitation and microarray analysis protocol, eRIP, that has high specificity and sensitivity was developed to test endogenous LIN28-associated mRNA cargo shifting. A combined eRIP and polysome analysis of early stage differentiation of hESCs with two distinct differentiation cues revealed close similarities between the dynamics of LIN28 association and translational modulation of genes involved in the Wnt signaling, cell cycle, RNA metabolism and proteasomal pathways. Our data demonstrate that change in translational efficiency is a major contributor to early stages of differentiation of hESCs, in which LIN28 plays a central role. This implies that eRIP analysis of LIN28-associated RNA cargoes may be used for rapid functional quality control of pluripotent stem cells under manufacture for therapeutic applications.

Indexed as

Protein BiosynthesisCell DifferentiationCells, CulturedEmbryonic Stem CellsHumansPolyribosomesRNA-Binding ProteinsRNA, MessengerLin28A protein, humanRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID24860167
PMCPMC4081066
OpenAlexW2134781725

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.