Evidence map›Paper›PMID 24858934›Full record

ArticleThe Plant cell2014

Carotene Hydroxylase Activity Determines the Levels of Both α-Carotene and Total Carotenoids in Orange Carrots.

Jacobo Arango, Matthieu Jourdan, Emmanuel Geoffriau, Peter Beyer, Ralf Welsch

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 153 citations in OpenAlex.

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  13. International journal of molecular sciences · 2024
    Article
  14. 15-Foods (Basel, Switzerland) · 2024
    Article
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  17. Telomere-to-telomere carrot (Horticulture research · 2023
    Article
  18. Article
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  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jacobo ArangoUniversity of Freiburg, Faculty of Biology II, Freiburg, Germany.
Matthieu JourdanAgrocampus Ouest, Unité Mixte de Recherche 1345 Institut de Recherche en Horticulture et Semences, Angers, France.ORCID http://orcid.org/0000-0003-3039-818X
Emmanuel GeoffriauAgrocampus Ouest, Unité Mixte de Recherche 1345 Institut de Recherche en Horticulture et Semences, Angers, France.ORCID http://orcid.org/0000-0003-4384-3107
Peter BeyerUniversity of Freiburg, Faculty of Biology II, Freiburg, Germany.
Ralf WelschUniversity of Freiburg, Faculty of Biology II, Freiburg, Germany ralf.welsch@biologie.uni-freiburg.de.ORCID http://orcid.org/0000-0002-2865-2743
University of Freiburg · DEInstitut Agro Rennes-Angers · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The typically intense carotenoid accumulation in cultivated orange-rooted carrots (Daucus carota) is determined by a high protein abundance of the rate-limiting enzyme for carotenoid biosynthesis, phytoene synthase (PSY), as compared with white-rooted cultivars. However, in contrast to other carotenoid accumulating systems, orange carrots are characterized by unusually high levels of α-carotene in addition to β-carotene. We found similarly increased α-carotene levels in leaves of orange carrots compared with white-rooted cultivars. This has also been observed in the Arabidopsis thaliana lut5 mutant carrying a defective carotene hydroxylase CYP97A3 gene. In fact, overexpression of CYP97A3 in orange carrots restored leaf carotenoid patterns almost to those found in white-rooted cultivars and strongly reduced α-carotene levels in the roots. Unexpectedly, this was accompanied by a 30 to 50% reduction in total root carotenoids and correlated with reduced PSY protein levels while PSY expression was unchanged. This suggests a negative feedback emerging from carotenoid metabolites determining PSY protein levels and, thus, total carotenoid flux. Furthermore, we identified a deficient CYP97A3 allele containing a frame-shift insertion in orange carrots. Association mapping analysis using a large carrot population revealed a significant association of this polymorphism with both α-carotene content and the α-/β-carotene ratio and explained a large proportion of the observed variation in carrots.

Identifiers

PMID24858934
PMCPMC4079379
OpenAlexW2140561039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.