Evidence map›Paper›PMID 24858484›Full record

ArticleDevelopmental biology2014

Gtpbp2 is required for BMP signaling and mesoderm patterning in Xenopus embryos.

Arif Kirmizitas, William Q Gillis, Haitao Zhu, Gerald H Thomsen

Abstract read
In one paragraph

Article in Developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  7. A novelClinical case reports · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Arif KirmizitasDepartment of Biochemistry and Cell Biology, Graduate Program in Molecular and Cellular Biology, Center for Developmental Genetics, Stony Brook University, Stony Brook, NY 11794-5215, USA.
William Q GillisDepartment of Biochemistry and Cell Biology, Graduate Program in Molecular and Cellular Biology, Center for Developmental Genetics, Stony Brook University, Stony Brook, NY 11794-5215, USA.
Haitao ZhuDepartment of Biochemistry and Cell Biology, Graduate Program in Molecular and Cellular Biology, Center for Developmental Genetics, Stony Brook University, Stony Brook, NY 11794-5215, USA.
Gerald H ThomsenDepartment of Biochemistry and Cell Biology, Graduate Program in Molecular and Cellular Biology, Center for Developmental Genetics, Stony Brook University, Stony Brook, NY 11794-5215, USA. Electronic address: gerald.h.thomsen@stonybrook.edu.
Stony Brook University · US

Funding

IRACDA - The New York Consortium for the Advancement of Postdoctoral Scholars (NY CAPS)Phase IIK12GM102778 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Carol A. Carter, Karian Janice Wright · 2012 to 2026
$13.1M
THE BIOCHEMISTRY AND CELL BIOLOGY OF METABOLIC DISEASEST32DK007521 · NIDDK · STATE UNIVERSITY NEW YORK STONY BROOK · PI MALBON, CRAIG C · 1987 to 2012
$3.9M
Regulation of TGF-beta Signaling and Embryonic Development by GTPasesR01GM080462 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI THOMSEN, GERALD H · 2007 to 2010
$1.2M
NIDDK NIH HHS 2T32DK007521NIDDK NIH HHS T32 DK007521NIGMS NIH HHS 1K12GM102778NIGMS NIH HHS 5R01GM080462NIGMS NIH HHS K12 GM102778NIGMS NIH HHS R01 GM080462
6 · The paper itself

Abstract

Smad proteins convey canonical intracellular signals for activated receptors in the TGFβ superfamily, but the activity of Smads and their impact on target genes are further regulated by a wide variety of cofactors and partner proteins. We have identified a new Smad1 partner, a GTPase named Gtpbp2 that is a distant relative of the translation factor eEf1a. Gtpbp2 affects canonical signaling in the BMP branch of the TGFβ superfamily, as morpholino knockdown of Gtpbp2 decreases, and overexpression of Gtpbp2 enhances, animal cap responses to BMP4. During Xenopus development, gtpbp2 transcripts are maternally expressed and localized to the egg animal pole, and partitioned into the nascent ectodermal and mesodermal cells during cleavage and early gastrulation stages. Subsequently, gtpbp2 is expressed in the neural folds, and in early tadpoles undergoing organogenesis gtpbp2 is expressed prominently in the brain, eyes, somites, ventral blood island and branchial arches. Consistent with its expression, morpholino knockdown of Gtpbp2 causes defects in ventral-posterior germ layer patterning, gastrulation and tadpole morphology. Overexpressed Gtpbp2 can induce ventral-posterior marker genes and localize to cell nuclei in Xenopus animal caps, highlighting its role in regulating BMP signaling in the early embryo. Here, we introduce this large GTPase as a novel factor in BMP signaling and ventral-posterior patterning.

Indexed as

AnimalsBlotting, WesternBody PatterningBone Morphogenetic ProteinsDNA, ComplementaryGene Knockdown TechniquesGTP PhosphohydrolasesImmunoprecipitationIn Situ HybridizationLuciferasesMicroscopy, FluorescenceMorpholinosReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSignal TransductionSmad1 ProteinBone Morphogenetic ProteinsDNA, ComplementaryGtpbp2 protein, XenopusGTP PhosphohydrolasesLuciferasesMorpholinosSmad1 ProteinXenopus ProteinsBMP signalingGTPaseGtpbp2Smad1Ventral patterningXenopus embryo

Identifiers

PMID24858484
PMCPMC4627492
OpenAlexW2042504860

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.