Evidence map›Paper›PMID 24856833›Full record

ArticleJournal of medicinal chemistry2014

Structure-activity relationship studies of indole-based compounds as small molecule HIV-1 fusion inhibitors targeting glycoprotein 41.

Guangyan Zhou, Vladimir Sofiyev, Hardeep Kaur, Beth A Snyder, Marie K Mankowski, Priscilla A Hogan, Roger G Ptak, Miriam Gochin

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Bisindole Compounds-Synthesis and Medicinal Properties.Antibiotics (Basel, Switzerland) · 2024
    Review
  2. Article
  3. Article
  4. A targeted covalent small molecule inhibitor of HIV-1 fusion.Chemical communications (Cambridge, England) · 2021
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Enhanced potency of bivalent small molecule gp41 inhibitors.Bioorganic & medicinal chemistry · 2017
    Article
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Guangyan ZhouDepartment of Basic Sciences, Touro University-California , 1310 Club Drive, Mare Island, Vallejo, California 94592, United States.
Vladimir Sofiyev
Hardeep Kaur
Beth A Snyder
Marie K Mankowski
Priscilla A Hogan
Roger G Ptak
Miriam Gochin
Southern Research Institute · USTouro University California · USUniversity of California, San Francisco · US

Funding

XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 1985 to 2011
$17.6M
Structure-based discovery and development of HIV-1 gp41 fusion inhibitorsR01GM087998 · NIGMS · TOURO UNIVERSITY OF CALIFORNIA · PI GOCHIN, MIRIAM · 2010 to 2013
$1.1M
Rational design of indole compounds as HIV fusion inhibitorsR21AI093243 · NIAID · TOURO UNIVERSITY OF CALIFORNIA · PI GOCHIN, MIRIAM · 2011 to 2012
$385k
NCRR NIH HHS P41 RR001081NCRR NIH HHS P41 RR-01081NIAID NIH HHS AI093243NIAID NIH HHS R21 AI093243NIGMS NIH HHS GM087998NIGMS NIH HHS R01 GM087998
6 · The paper itself

Abstract

We previously described indole-containing compounds with the potential to inhibit HIV-1 fusion by targeting the hydrophobic pocket of transmembrane glycoprotein gp41. Here we report optimization and structure-activity relationship studies on the basic scaffold, defining the role of shape, contact surface area, and molecular properties. Thirty new compounds were evaluated in binding, cell-cell fusion, and viral replication assays. Below a 1 μM threshold, correlation between binding and biological activity was diminished, indicating an amphipathic requirement for activity in cells. The most active inhibitor 6j exhibited 0.6 μM binding affinity and 0.2 μM EC50 against cell-cell fusion and live virus replication and was active against T20 resistant strains. Twenty-two compounds with the same connectivity displayed a consensus pose in docking calculations, with rank order matching the biological activity. The work provides insight into requirements for small molecule inhibition of HIV-1 fusion and demonstrates a potent low molecular weight fusion inhibitor.

Indexed as

BenzoatesCell FusionCell LineDrug Resistance, ViralEnfuvirtideHIV-1HIV Envelope Protein gp41HIV Fusion InhibitorsHumansIndolesMolecular Docking SimulationPeptide FragmentsStructure-Activity RelationshipVirus Replication3-((6-(1-((3-methoxycarbonylphenyl)methyl)indol-6-yl)indol-1-yl)methyl)benzoic acidBenzoatesEnfuvirtideHIV Envelope Protein gp41HIV Fusion InhibitorsIndolesPeptide Fragments

Identifiers

PMID24856833
PMCPMC4216203
OpenAlexW2317789343

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.