Evidence map›Paper›PMID 24856417›Full record

ArticleEmerging infectious diseases2014

Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya.

Charles N Agoti, James R Otieno, Caroline W Gitahi, Patricia A Cane, D James Nokes

Abstract read
In one paragraph

Article in Emerging infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 4 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Charles N Agoti
James R Otieno
Caroline W Gitahi
Patricia A Cane
D James Nokes

Funding

Wellcome TrustWellcome Trust 084633
6 · The paper itself

Abstract

Respiratory syncytial virus genotype ON1, which is characterized by a 72-nt duplication in the attachment protein gene, has been detected in >10 countries since first identified in Ontario, Canada, in 2010. We describe 2 waves of genotype ON1 infections among children admitted to a rural hospital in Kenya during 2012. Phylogenetic analysis of attachment protein gene sequences showed multiple introductions of genotype ON1; variants distinct from the original Canadian viruses predominated in both infection waves. The genotype ON1 dominated over the other group A genotypes during the second wave, and some first wave ON1 variants reappeared in the second wave. An analysis of global genotype ON1 sequences determined that this genotype has become considerably diversified and has acquired signature coding mutations within immunogenic regions, and its most recent common ancestor dates to ≈2008-2009. Surveillance of genotype ON1 contributes to an understanding of the mechanisms of rapid emergence of respiratory viruses.

Indexed as

Genes, ViralGenotypePhylogenyAmino Acid SequenceChild, PreschoolFemaleHumansInfant, NewbornKenyaMaleMolecular EpidemiologyMolecular Sequence DataMutationRespiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsSeasonsattachment protein GViral Envelope Proteinsattachment proteinepidemicsgenotype ON1G glycoproteinG protein genehumansKenyaON1phylogenetic analysispneumoniarespiratory syncytial virusrespiratory virusesRSVsurveillanceviruses

Identifiers

PMID24856417
PMCPMC4036793

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.