Evidence map›Paper›PMID 24854274›Full record

ArticleJournal of the American Society of Nephrology : JASN2014

Lmx1b and FoxC combinatorially regulate podocin expression in podocytes.

Bing He, Lwaki Ebarasi, Zhe Zhao, Jing Guo, Juha R M Ojala, Kjell Hultenby, Sarah De Val, Christer Betsholtz, Karl Tryggvason

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Inducible ATF3-NFAT axis aggravates podocyte injury.Journal of molecular medicine (Berlin, Germany) · 2018
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Podocyte-actin dynamics in health and disease.Nature reviews. Nephrology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Bing HeDepartment of Medical Biochemistry and Biophysics, Division of Matrix Biology, and Bing.He@ki.se Karl.Tryggvason@ki.se.
Lwaki EbarasiDepartment of Medical Biochemistry and Biophysics, Division of Vascular Biology, and Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden;
Zhe ZhaoLudwig Institute for Cancer Research, Oxford University, Oxford, United Kingdom; and.
Jing GuoDepartment of Medical Biochemistry and Biophysics, Division of Matrix Biology, and.
Juha R M OjalaDepartment of Medical Biochemistry and Biophysics, Division of Matrix Biology, and.
Kjell HultenbyDepartment of Laboratory Medicine, Division of Clinical Research Centre, Karolinska Institute, Stockholm, Sweden;
Sarah De ValLudwig Institute for Cancer Research, Oxford University, Oxford, United Kingdom; and.
Christer BetsholtzDepartment of Medical Biochemistry and Biophysics, Division of Vascular Biology, and Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden;
Karl TryggvasonDepartment of Medical Biochemistry and Biophysics, Division of Matrix Biology, and Cardiovascular & Metabolic Disorders Program, Duke-NUS, Singapore Bing.He@ki.se Karl.Tryggvason@ki.se.
Matrix Research (United States) · USLudwig Cancer Research · GBDuke-NUS Medical School · SGKarolinska Institutet · SEScience for Life Laboratory · SEUppsala University · SE

Funding

British Heart Foundation PG/10/83/28610
6 · The paper itself

Abstract

Podocin is a key protein of the kidney podocyte slit diaphragm protein complex, an important part of the glomerular filtration barrier. Mutations in the human podocin gene NPHS2 cause familial or sporadic forms of renal disease owing to the disruption of filtration barrier integrity. The exclusive expression of NPHS2 in podocytes reflects its unique function and raises interesting questions about its transcriptional regulation. Here, we further define a 2.5-kb zebrafish nphs2 promoter fragment previously described and identify a 49-bp podocyte-specific transcriptional enhancer using Tol2-mediated G0 transgenesis in zebrafish. Within this enhancer, we identified a cis-acting element composed of two adjacent DNA-binding sites (FLAT-E and forkhead) bound by transcription factors Lmx1b and FoxC. In zebrafish, double knockdown of Lmx1b and FoxC orthologs using morpholino doses that caused no or minimal phenotypic changes upon individual knockdown completely disrupted podocyte development in 40% of injected embryos. Co-overexpression of the two genes potently induced endogenous nphs2 expression in zebrafish podocytes. We found that the NPHS2 promoter also contains a cis-acting Lmx1b-FoxC motif that binds LMX1B and FoxC2. Furthermore, a genome-wide search identified several genes that carry the Lmx1b-FoxC motif in their promoter regions. Among these candidates, motif-driven podocyte enhancer activity of CCNC and MEIS2 was functionally analyzed in vivo. Our results show that podocyte expression of some genes is combinatorially regulated by two transcription factors interacting synergistically with a common enhancer. This finding provides insights into transcriptional mechanisms required for normal and pathologic podocyte functions.

Indexed as

Gene Expression RegulationAmino Acid MotifsAnimalsAnimals, Genetically ModifiedBinding SitesEnhancer Elements, GeneticForkhead Transcription FactorsHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsLIM-Homeodomain ProteinsMembrane ProteinsMiceMice, Inbred C57BLMicroscopy, ConfocalMutagenesisForkhead Transcription FactorsFoxc1a protein, zebrafishFoxc1 protein, mouseIntracellular Signaling Peptides and ProteinsLIM homeobox transcription factor 1 betaLIM-Homeodomain Proteinslmx1bb protein, zebrafishMembrane ProteinsNPHS2 proteinTranscription FactorsZebrafish ProteinsCombinatorial regulationLmx1b and FoxCNPHS2 expressionpodocytetransgenic zebrafish

Identifiers

PMID24854274
PMCPMC4243338
OpenAlexW2124989319

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.