Evidence map›Paper›PMID 24853996›Full record

ArticleJournal of proteome research2014

Targeted discovery and validation of plasma biomarkers of Parkinson's disease.

Catherine Pan, Yong Zhou, Romel Dator, Carmen Ginghina, Yanchun Zhao, James Movius, Elaine Peskind, Cyrus P Zabetian, Joseph Quinn, Douglas Galasko and 3 more

Abstract readValidation Study
In one paragraph

Article in Journal of proteome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  6. Article
  7. SPR immunosensor combined with TiMikrochimica acta · 2020
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Clinical proteomics · 2019
    Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Catherine PanDepartment of Pathology, University of Washington School of Medicine , 325 9th Avenue, HMC 359635, Seattle, Washington 98104, United States.
Yong Zhou
Romel Dator
Carmen Ginghina
Yanchun Zhao
James Movius
Elaine Peskind
Cyrus P Zabetian
Joseph Quinn
Douglas Galasko
Tessandra Stewart
Min Shi
Jing Zhang
University of Washington · USInstitute for Systems Biology · USOregon Health & Science University · USUniversity of California, San Diego · USVA Puget Sound Health Care System · US

Funding

THERAPEUTIC EFFECTS OF INTRA-NASAL INSULIN DETEMIRP50AG005136 · NIA · UNIVERSITY OF WASHINGTON · PI JAYADEY, SUMAN · 1985 to 2019
$57.2M
VIRUS-INDUCED BRAIN PATHOLOGYP50AG005131 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BREWER, JAMES B · 1985 to 2018
$55.4M
WILDLIFE BIOMARKER APPLICATIONS TO REMEDIATION DECISION MAKINGP42ES004696 · NIEHS · UNIVERSITY OF WASHINGTON · PI GALLAGHER, EVAN P · 1987 to 2021
$51.2M
XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI ALI SHOJAIE · 1995 to 2026
$42.5M
Udall Center Director's meeting poster awardP50NS062684 · NINDS · UNIVERSITY OF WASHINGTON · PI MONTINE, THOMAS J · 2009 to 2020
$18.3M
Biostatistics, Epidemiologic & Bioinformatic Training in Environmental HealthT32ES015459 · NIEHS · UNIVERSITY OF WASHINGTON · PI June T. Spector · 2009 to 2026
$10.6M
Large Scale Biomarker Discovery and Validation for Parkinsons DiseaseU01NS082137 · NINDS · UNIVERSITY OF WASHINGTON · PI ZHANG, JING · 2012 to 2016
$6.0M
Biomarkers for Preclinical Parkinson's diseaseR01NS057567 · NINDS · UNIVERSITY OF WASHINGTON · PI ZHANG, JING · 2008 to 2012
$3.1M
Interaction of alpha-synuclein and neurotoxicants with Mac1-NADPH oxidaseR01ES019277 · NIEHS · UNIVERSITY OF WASHINGTON · PI ZHANG, JING · 2011 to 2015
$2.0M
Microglial Phox Activity In Parkinson's DiseaseR01ES016873 · NIEHS · UNIVERSITY OF WASHINGTON · PI ZHANG, JING · 2010 to 2014
$1.7M
Post-translational Modifications of Proteins in Parkinson?s diseaseR01AG033398 · NIA · UNIVERSITY OF WASHINGTON · PI ZHANG, JING · 2008 to 2012
$1.6M
Plasma biomarkers for Parkinson's diseaseR43NS065553 · NINDS · INARIAN- NEURODIAGNOSTIC · PI PAN, CATHERINE DANHUA · 2010 to 2011
$507k
NIA NIH HHS AG033398NIA NIH HHS P50 AG005131NIA NIH HHS P50 AG005136NIA NIH HHS R01 AG033398NIEHS NIH HHS ES004696-5897NIEHS NIH HHS ES007033-6364NIEHS NIH HHS ES016873NIEHS NIH HHS ES019277NIEHS NIH HHS P30 ES007033NIEHS NIH HHS P42 ES004696NIEHS NIH HHS R01 ES016873NIEHS NIH HHS R01 ES019277NIEHS NIH HHS T32 ES015459NINDS NIH HHS NS057567NINDS NIH HHS NS060252NINDS NIH HHS NS062684NINDS NIH HHS NS062684-6221NINDS NIH HHS NS082137NINDS NIH HHS P50 NS062684NINDS NIH HHS R01 NS057567NINDS NIH HHS R21 NS060252NINDS NIH HHS R43 NS065553NINDS NIH HHS R43NS065553NINDS NIH HHS U01 NS082137PHS HHS AGO5131
6 · The paper itself

Abstract

Despite extensive research, an unmet need remains for protein biomarkers of Parkinson's disease (PD) in peripheral body fluids, especially blood, which is easily accessible clinically. The discovery of such biomarkers is challenging, however, due to the enormous complexity and huge dynamic range of human blood proteins, which are derived from nearly all organ systems, with those originating specifically from the central nervous system (CNS) being exceptionally low in abundance. In this investigation of a relatively large cohort (∼300 subjects), selected reaction monitoring (SRM) assays (a targeted approach) were used to probe plasma peptides derived from glycoproteins previously found to be altered in the CNS based on PD diagnosis or severity. Next, the detected peptides were interrogated for their diagnostic sensitivity and specificity as well as the correlation with PD severity, as determined by the Unified Parkinson's Disease Rating Scale (UPDRS). The results revealed that 12 of the 50 candidate glycopeptides were reliably and consistently identified in plasma samples, with three of them displaying significant differences among diagnostic groups. A combination of four peptides (derived from PRNP, HSPG2, MEGF8, and NCAM1) provided an overall area under curve (AUC) of 0.753 (sensitivity: 90.4%; specificity: 50.0%). Additionally, combining two peptides (derived from MEGF8 and ICAM1) yielded significant correlation with PD severity, that is, UPDRS (r = 0.293, p = 0.004). The significance of these results is at least two-fold: (1) it is possible to use a targeted approach to identify otherwise very difficult to detect CNS related biomarkers in peripheral blood and (2) the novel biomarkers, if validated in independent cohorts, can be employed to assist with clinical diagnosis of PD as well as monitoring disease progression.

Indexed as

GlycopeptidesArea Under CurveBiomarkersCohort StudiesDisease ProgressionGlycoproteinsHumansParkinson DiseaseSensitivity and SpecificityBiomarkersGlycopeptidesGlycoproteinsParkinson’s diseaseperipheral biomarkersselected reaction monitoringtargeted mass spectrometry

Identifiers

PMID24853996
PMCPMC4224986
OpenAlexW2320474879

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.