ArticleNature communications2014
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.
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603 citing papers in PubMed, 1,226 citations in OpenAlex.
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Authors and funding
86 authors at 20 institutions in 9 countries.
Shengyi Liu1] The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China [2].
Yumei Liu1] The Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China [2].
Xinhua Yang1] Beijing Genome Institute-Shenzhen, Shenzhen 518083, China [2].
Chaobo Tong1] The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China [2].
David Edwards1] Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, Brisbane, Queensland 4072, Australia [2].
Isobel A P Parkin1] Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada S7N OX2 [2].
Meixia Zhao1] The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China [2] Department of Agronomy, Purdue University, WSLR Building B018, West Lafayette, Indiana 47907, USA.
Jianxin MaDepartment of Agronomy, Purdue University, WSLR Building B018, West Lafayette, Indiana 47907, USA.
Jingyin YuThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Shunmou HuangThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Xiyin Wang1] Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA [2] Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan 063000, China.
Junyi WangBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Kun LuCollege of Agronomy and Biotechnology, Southwest University, BeiBei District, Chongqing 400715, China.
Zhiyuan FangThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Ian BancroftCentre for Novel Agricultural Products (CNAP), Department of Biology, University of York, Wentworth Way, Heslington, York YO10 5DD, UK.
Tae-Jin YangDepartment of Plant Sciences, Plant Genomics and Breeding Institute and Research Institute for Agriculture and Life Sciences, College of Agriculture & Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea.
Qiong HuThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Xinfa WangThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Zhen YueBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Haojie LiSichuan Academy of Agricultural Sciences, Chengdu 610066, China.
Linfeng YangBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Jian WuThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Qing ZhouBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Wanxin WangThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Graham J KingSouthern Cross Plant Science, Southern Cross University, Lismore, New South Wales 2480, Australia.
J Chris PiresBond Life Sciences Center, University of Missouri, Columbia, Missouri 65211-7310, USA.
Changxin LuBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Zhangyan WuBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Perumal SampathDepartment of Plant Sciences, Plant Genomics and Breeding Institute and Research Institute for Agriculture and Life Sciences, College of Agriculture & Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea.
Zhuo WangBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Hui GuoPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Shengkai PanBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Limei YangThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Jiumeng MinBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Dong ZhangPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Dianchuan JinCenter for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan 063000, China.
Wanshun LiBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Harry BelcramOrganization and Evolution of Plant Genomes, Unité de Recherche en Génomique Végétale, Unité Mixte de Recherche 1165 (Institut National de Recherche Agronomique, Centre National de la Recherche Scientifique, Université Evry Val d'Essonne), Evry 91057, France.
Jinxing TuNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.
Mei GuanCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Cunkou QiJiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
Dezhi DuQinghai Academy of Agriculture and Forestry Sciences, National Key Laboratory Breeding Base for Innovation and Utilization of Plateau Crop Germplasm, Xining 810016, China.
Jiana LiCollege of Agronomy and Biotechnology, Southwest University, BeiBei District, Chongqing 400715, China.
Liangcai JiangSichuan Academy of Agricultural Sciences, Chengdu 610066, China.
Jacqueline BatleyAustralian Research Council Centre of Excellence for Integrative Legume Research, University of Queensland, Brisbane, Queensland 4072, Australia.
Andrew G SharpeNational Research Council Canada, Saskatoon, Saskatchewan, Canada S7N 0W9.
Beom-Seok ParkThe Agricultural Genome Center, National Academy of Agricultural Science, RDA, 126 Suin-Ro, Suwon 441-707, Republic of Korea.
Pradeep RuperaoAustralian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, Brisbane, Queensland 4072, Australia.
Feng ChengThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Nomar Espinosa Waminal1] Department of Plant Sciences, Plant Genomics and Breeding Institute and Research Institute for Agriculture and Life Sciences, College of Agriculture & Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea [2] Department of Life Science, Plant Biotechnology Institute, Sahmyook University, Seoul 139-742, Republic of Korea.
Yin HuangBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Caihua DongThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Li WangCenter for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan 063000, China.
Jingping LiPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Zhiyong HuThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Mu ZhuangThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Yi HuangThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Junyan HuangThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Jiaqin ShiThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Desheng MeiThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Jing LiuThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Tae-Ho LeePlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Jinpeng WangCenter for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan 063000, China.
Huizhe JinPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Zaiyun LiNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.
Xun LiCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Jiefu ZhangJiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
Lu XiaoQinghai Academy of Agriculture and Forestry Sciences, National Key Laboratory Breeding Base for Innovation and Utilization of Plateau Crop Germplasm, Xining 810016, China.
Yongming ZhouNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.
Zhongsong LiuCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Xuequn LiuSchool of Life Sciences, South-Central University for Nationality, Wuhan 430074, China.
Rui QinSchool of Life Sciences, South-Central University for Nationality, Wuhan 430074, China.
Xu TangPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Wenbin LiuBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Yupeng WangPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Yangyong ZhangThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Jonghoon LeeDepartment of Plant Sciences, Plant Genomics and Breeding Institute and Research Institute for Agriculture and Life Sciences, College of Agriculture & Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea.
Hyun Hee KimDepartment of Life Science, Plant Biotechnology Institute, Sahmyook University, Seoul 139-742, Republic of Korea.
France Denoeud1] Commissariat à l'Energie Atomique (CEA), Genoscope, Institut de Génomique, BP5706 Evry 91057, France [2] Centre National de Recherche Scientifique (CNRS), Université d'Evry, UMR 8030, CP5706, Evry 91057, France.
Xun XuBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Xinming LiangBeijing Genome Institute-Shenzhen, Shenzhen 518083, China.
Wei HuaThe Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture of PRC, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
Xiaowu WangThe Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, The Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China.
Jun Wang1] Beijing Genome Institute-Shenzhen, Shenzhen 518083, China [2] Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark [3] King Abdulaziz University, Jeddah, 21589, Saudi Arabia [4] Department of Medicine and State Key Laboratory of Pharmaceutical Biotechnology, University of Hong Kong, 21 Sassoon Road, Hong Kong.
Boulos ChalhoubOrganization and Evolution of Plant Genomes, Unité de Recherche en Génomique Végétale, Unité Mixte de Recherche 1165 (Institut National de Recherche Agronomique, Centre National de la Recherche Scientifique, Université Evry Val d'Essonne), Evry 91057, France.
Andrew H PatersonPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30605, USA.
Chinese Academy of Agricultural Sciences · CNBGI Group (China) · CNUniversity of Georgia · USHuazhong Agricultural University · CNHunan Agricultural University · CNNorth China University of Science and Technology · CNSeoul National University · KRJiangsu Academy of Agricultural Sciences · CNSahmyook University · KRSichuan Academy of Agricultural Sciences · CNSouth Central Minzu University · CNAgriculture and Agri-Food Canada · CAAustralian Centre for Plant Functional Genomics · AUAustralian Research Council · AUGénomique Métabolique du Genoscope · FRSaskatchewan Research Council (Canada) · CASouthern Cross University · AUThe University of Queensland · AUUniversity of Hong Kong · HKUniversity of Missouri · US
Funding
Biotechnology and Biological Sciences Research Council BB/E017363/1
Abstract
Polyploidization has provided much genetic variation for plant adaptive evolution, but the mechanisms by which the molecular evolution of polyploid genomes establishes genetic architecture underlying species differentiation are unclear. Brassica is an ideal model to increase knowledge of polyploid evolution. Here we describe a draft genome sequence of Brassica oleracea, comparing it with that of its sister species B. rapa to reveal numerous chromosome rearrangements and asymmetrical gene loss in duplicated genomic blocks, asymmetrical amplification of transposable elements, differential gene co-retention for specific pathways and variation in gene expression, including alternative splicing, among a large number of paralogous and orthologous genes. Genes related to the production of anticancer phytochemicals and morphological variations illustrate consequences of genome duplication and gene divergence, imparting biochemical and morphological variation to B. oleracea. This study provides insights into Brassica genome evolution and will underpin research into the many important crops in this genus.
Indexed as
Evolution, MolecularGenome, PlantPolyploidyArabidopsisBrassicaConserved SequenceDNA Transposable ElementsGene ConversionGene DosageGene DuplicationGene RearrangementGenes, DuplicateGenes, PlantGenetic VariationGlucosinolatesMolecular Sequence AnnotationDNA Transposable ElementsGlucosinolates
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