ArticlePloS one2014
The chloroplast genome of Hyoscyamus niger and a phylogenetic study of the tribe Hyoscyameae (Solanaceae).
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed, 38 citations in OpenAlex.
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- The first checklist of alien vascular plants of Kyrgyzstan, with new records and critical evaluation of earlier data. Contribution 2.Biodiversity data journal · 2022Article
- Plastid phylogenomics and biogeography of the medicinal plant lineage Hyoscyameae (Solanaceae).Plant diversity · 2021Article
- Comparing and phylogenetic analysis chloroplast genome of three Achyranthes species.Scientific reports · 2020Article
- RNA editing in the chloroplast of Asian Palmyra palm (Borassus flabellifer).Genetics and molecular biology · 2020Article
- Polyploidization is accompanied by synonymous codon usage bias in the chloroplast genomes of both cotton and wheat.PloS one · 2020Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2019Article
- Sequencing and Structural Analysis of the Complete Chloroplast Genome of the Medicinal PlantPlants (Basel, Switzerland) · 2019Article
- Sequencing and Comparative Analysis of the Chloroplast Genome ofMolecules (Basel, Switzerland) · 2019Article
- The Complete Chloroplast Genomes of SixFrontiers in plant science · 2018Article
- The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae.PloS one · 2018Article
- The Complete Chloroplast Genome Sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and Comparative Analysis with Other Fritillaria Species.Molecules (Basel, Switzerland) · 2017Article
- Chloroplast genomes: diversity, evolution, and applications in genetic engineering.Genome biology · 2016Review
- Homologous recombination and retention of a single form of most genes shape the highly chimeric mitochondrial genome of a cybrid plant.The New phytologist · 2015Article
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2 authors at 1 institution in 1 country.
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Abstract
The tribe Hyoscyameae (Solanaceae) is restricted to Eurasia and includes the genera Archihyoscyamus, Anisodus, Atropa, Atropanthe, Hyoscyamus, Physochlaina, Przewalskia and Scopolia. Even though the monophyly of Hyoscyameae is strongly supported, the relationships of the taxa within the tribe remain unclear. Chloroplast markers have been widely used to elucidate plant relationships at low taxonomic levels. Identification of variable chloroplast intergenic regions has been developed based on comparative genomics of chloroplast genomes, but these regions have a narrow phylogenetic utility. In this study, we present the chloroplast genome sequence of Hyoscyamus niger and make comparisons to other solanaceous plastid genomes in terms of gene order, gene and intron content, editing sites, origins of replication, repeats, and hypothetical open reading frames. We developed and sequenced three variable plastid markers from eight species to elucidate relationships within the tribe Hyoscyameae. The presence of a horizontally transferred intron in the mitochondrial cox1 gene of some species of the tribe is considered here a likely synapomorphy uniting five genera of the Hyoscyameae. Alternatively, the cox1 intron could be a homoplasious character acquired twice within the tribe. A homoplasious inversion in the intergenic plastid spacer trnC-psbM was recognized as a source of bias and removed from the data set used in the phylogenetic analyses. Almost 12 kb of plastid sequence data were not sufficient to completely resolve relationships among genera of Hyoscyameae but some clades were identified. Two alternative hypotheses of the evolution of the genera within the tribe are proposed.
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