Evidence map›Paper›PMID 24849933›Full record

ArticleJournal of human genetics2014

Mild reduction of plasmalogens causes rhizomelic chondrodysplasia punctata: functional characterization of a novel mutation.

Masafumi Noguchi, Masanori Honsho, Yuichi Abe, Ryusuke Toyama, Hajime Niwa, Yoshiteru Sato, Kamran Ghaedi, Ali Rahmanifar, Yousef Shafeghati, Yukio Fujiki

Erratum issuedOpen access · bronzeAbstract readCase Reports
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Reduction of Ether-Type Glycerophospholipids, Plasmalogens, by NF-κB Signal Leading to Microglial Activation.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  6. Peroxisomes in brain development and function.Biochimica et biophysica acta · 2016
    Review
  7. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Masafumi NoguchiGraduate School of Systems Life Sciences, Kyushu University Graduate School, Higashi-ku, Fukuoka, Japan.
Masanori HonshoDepartment of Biology, Faculty of Sciences, Kyushu University Graduate School, Higashi-ku, Fukuoka, Japan.
Yuichi AbeDepartment of Biology, Faculty of Sciences, Kyushu University Graduate School, Higashi-ku, Fukuoka, Japan.
Ryusuke ToyamaDepartment of Biology, Faculty of Sciences, Kyushu University Graduate School, Higashi-ku, Fukuoka, Japan.
Hajime NiwaDepartment of Biology, Faculty of Sciences, Kyushu University Graduate School, Higashi-ku, Fukuoka, Japan.
Yoshiteru SatoDepartment of Biology, Faculty of Sciences, Kyushu University Graduate School, Higashi-ku, Fukuoka, Japan.
Kamran GhaediDepartment of Biology, School of Sciences, University of Isfahan, and Cell Sciences Research Center, Royan Institute, Isfahan Research Station, Isfahan, Iran.
Ali RahmanifarMedical Genetic Metabolic Center, Sarem Women Hospital, Tehran, Iran.
Yousef ShafeghatiSarem Cell Research Center and Medical Genetics Department and Genetics Research Center, University of Social Welfare Sciences and Rehabilitation, Tehran, Iran.
Yukio FujikiDepartment of Biology, Faculty of Sciences, Kyushu University Graduate School, Higashi-ku, Fukuoka, Japan.
Kyushu University · JPSarem Cell Research Center · IRUniversity of Isfahan · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizomelic chondrodysplasia punctata (RCDP) is an autosomal recessive disorder due to the deficiency in ether lipid synthesis. RCDP type 1, the most prominent type, is caused by the dysfunction of the receptor of peroxisome targeting signal type 2, Pex7 (peroxisomal biogenesis factor 7), and the rest of the patients, RCDP types 2 and 3, have defects in peroxisomal enzymes catalyzing the initial two steps of alkyl-phospholipid synthesis, glyceronephosphate O-acyltransferase and alkylglycerone phosphate synthase (Agps). We herein investigated defects of two patients with RCDP type 3. Patient 1 had a novel missense mutation, T1533G, resulting in the I511M substitution in Agps. The plasmalogen level was mildly reduced, whereas the protein level and peroxisomal localization of Agps-I511M in fibroblasts were normal as in the control fibroblasts. Structure prediction analysis suggested that the mutated residue was located in the helix α15 on the surface of V-shaped active site tunnel in Agps, likely accounting for the mild defects of plasmalogen synthesis. These results strongly suggest that an individual with mildly affected level of plasmalogen synthesis develops RCDP. In fibroblasts from patient 2, the expression of AGPS mRNA and Agps protein was severely affected, thereby giving rise to the strong reduction of plasmalogen synthesis.

Indexed as

MutationAlkyl and Aryl TransferasesCell LineChild, PreschoolChondrodysplasia Punctata, RhizomelicDNA Mutational AnalysisFemaleFibroblastsGene ExpressionHumansModels, MolecularPlasmalogensProtein ConformationRNA, MessengerAlkyl and Aryl Transferasesalkylglycerone-phosphate synthasePlasmalogensRNA, Messenger

Identifiers

PMID24849933
OpenAlexW2026539650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.