Evidence map›Paper›PMID 24848457›Full record

ArticleGenes to cells : devoted to molecular & cellular mechanisms2014

Identification of two functional PCNA-binding domains in human DNA polymerase κ.

Jung-Hoon Yoon, Narottam Acharya, Jeseong Park, Debashree Basu, Satya Prakash, Louise Prakash

Open access · greenAbstract read
In one paragraph

Article in Genes to cells : devoted to molecular & cellular mechanisms, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Jung-Hoon YoonDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch at Galveston, 301 University Blvd., Galveston, Texas, 77555-1061, USA.
Narottam Acharya
Jeseong Park
Debashree Basu
Satya Prakash
Louise Prakash
The University of Texas Medical Branch at Galveston · US

Funding

Translesion DNA synthesis in humansR01ES012411 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PRAKASH, LOUISE · 2003 to 2012
$3.6M
Genetic control of replication through DNA lesions in humans, and carcinogenesisR01ES020833 · NIEHS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI PRAKASH, SATYA · 2012 to 2016
$1.7M
NIEHS NIH HHS ES012411NIEHS NIH HHS ES02833NIEHS NIH HHS R01 ES012411NIEHS NIH HHS R01 ES020833
6 · The paper itself

Abstract

Previously, we have shown that human DNA polymerase (Pol) η has two functional PCNA-binding motifs, PIP1 and PIP2, and that a C-terminal deletion of Polη that lacks the ubiquitin-binding UBZ domain and the PIP2 domain but retains the PIP1 domain promotes normal levels of translesion synthesis (TLS) opposite a cis-syn TT dimer in human cells. Here, we identify two PIP domains in Polκ and show that TLS occurs normally in human fibroblast cells in which the pip1 or pip2 mutant Polκ is expressed, but mutational inactivation of both PIP domains renders Polκ nonfunctional in TLS opposite the thymine glycol lesion. Thus, the two PIP domains of Polκ function redundantly in TLS opposite this DNA lesion in human cells. However, and surprisingly, whereas mutational inactivation of the PIP1 domain completely inhibits the stimulation of DNA synthesis by Polκ in the presence of proliferating cell nuclear antigen (PCNA), replication factor C, and replication protein A, mutations in PIP2 have no adverse effect on PCNA-dependent DNA synthesis. This raises the possibility that activation of Polκ PIP2 as a PCNA-binding domain occurs during TLS in human cells and that protein-protein interactions and post-transcriptional modifications are involved in such activation.

Indexed as

Carrier ProteinsCell LineDNADNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA ReplicationHumansMutationProtein Interaction Domains and MotifsReplication Protein AReplication Protein CY-Family DNA PolymerasesCarrier ProteinsDNADNA-Binding ProteinsDNA-Directed DNA PolymerasePCLAF protein, humanPOLK protein, humanReplication Protein AReplication Protein CY-Family DNA Polymerases

Identifiers

PMID24848457
PMCPMC4074225
OpenAlexW1984535452

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.