ArticleNucleic acids research2014
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed.
- Tandem sialoglycan-binding modules in aThe Journal of biological chemistry · 2020Article
- Three-Dimensional Structures of Carbohydrates and Where to Find Them.International journal of molecular sciences · 2020Review
- Facilities that make the PDB data collection more powerful.Protein science : a publication of the Protein Society · 2020Article
- PDBsum: Structural summaries of PDB entries.Protein science : a publication of the Protein Society · 2018Article
- The Eighth Central European Conference "Chemistry towards Biology": Snapshot.Molecules (Basel, Switzerland) · 2016Article
- Models of protein-ligand crystal structures: trust, but verify.Journal of computer-aided molecular design · 2015Article
- ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank.Nucleic acids research · 2015Article
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9 authors.
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Abstract
Structure validation has become a major issue in the structural biology community, and an essential step is checking the ligand structure. This paper introduces MotiveValidator, a web-based application for the validation of ligands and residues in PDB or PDBx/mmCIF format files provided by the user. Specifically, MotiveValidator is able to evaluate in a straightforward manner whether the ligand or residue being studied has a correct annotation (3-letter code), i.e. if it has the same topology and stereochemistry as the model ligand or residue with this annotation. If not, MotiveValidator explicitly describes the differences. MotiveValidator offers a user-friendly, interactive and platform-independent environment for validating structures obtained by any type of experiment. The results of the validation are presented in both tabular and graphical form, facilitating their interpretation. MotiveValidator can process thousands of ligands or residues in a single validation run that takes no more than a few minutes. MotiveValidator can be used for testing single structures, or the analysis of large sets of ligands or fragments prepared for binding site analysis, docking or virtual screening. MotiveValidator is freely available via the Internet at http://ncbr.muni.cz/MotiveValidator.
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