Evidence map›Paper›PMID 24847778›Full record

ArticlePloS one2014

Transposon mutagenesis of the plant-associated Bacillus amyloliquefaciens ssp. plantarum FZB42 revealed that the nfrA and RBAM17410 genes are involved in plant-microbe-interactions.

Anto Budiharjo, Soumitra Paul Chowdhury, Kristin Dietel, Barbara Beator, Olga Dolgova, Ben Fan, Wilfrid Bleiss, Jörg Ziegler, Michael Schmid, Anton Hartmann and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
7.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 40 citations in OpenAlex.

  1. Journal of bacteriology · 2026
    Review
  2. TheInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Novel Plant-AssociatedMicroorganisms · 2023
    Article
  5. Two plant-associatedFrontiers in plant science · 2023
    Article
  6. Review
  7. Inhibitory Abilities ofThe plant pathology journal · 2019
    Article
  8. Biofilm formation is determinant in tomato rhizosphere colonization by Bacillus velezensis FZB42.Environmental science and pollution research international · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Anto BudiharjoBakteriengenetik, Institut für Biologie, Humboldt Universität Berlin, Berlin, Germany.
Soumitra Paul ChowdhuryResearch Unit Microbe-Plant Interactions, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
Kristin DietelABiTEP GmbH, Berlin, Germany.
Barbara BeatorBakteriengenetik, Institut für Biologie, Humboldt Universität Berlin, Berlin, Germany.
Olga DolgovaABiTEP GmbH, Berlin, Germany.
Ben FanBakteriengenetik, Institut für Biologie, Humboldt Universität Berlin, Berlin, Germany.
Wilfrid BleissMolekulare Parasitologie, Institut für Biologie, Humboldt Universität Berlin, Berlin, Germany.
Jörg ZieglerAbteilung Molekulare Signalverarbeitung, Leibniz-Institut für Pflanzenbiochemie, Halle/Saale, Germany.
Michael SchmidResearch Unit Microbe-Plant Interactions, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
Anton HartmannResearch Unit Microbe-Plant Interactions, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
Rainer BorrissBakteriengenetik, Institut für Biologie, Humboldt Universität Berlin, Berlin, Germany; ABiTEP GmbH, Berlin, Germany.
Humboldt-Universität zu Berlin · DEHelmholtz Zentrum München · DELeibniz Institute of Plant Biochemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus amyloliquefaciens ssp. plantarum FZB42 represents the prototype of Gram-positive plant growth promoting and biocontrol bacteria. In this study, we applied transposon mutagenesis to generate a transposon library, which was screened for genes involved in multicellular behavior and biofilm formation on roots as a prerequisite of plant growth promoting activity. Transposon insertion sites were determined by rescue-cloning followed by DNA sequencing. As in B. subtilis, the global transcriptional regulator DegU was identified as an activator of genes necessary for swarming and biofilm formation, and the DegU-mutant of FZB42 was found impaired in efficient root colonization. Direct screening of 3,000 transposon insertion mutants for plant-growth-promotion revealed the gene products of nfrA and RBAM_017140 to be essential for beneficial effects exerted by FZB42 on plants. We analyzed the performance of GFP-labeled wild-type and transposon mutants in the colonization of lettuce roots using confocal laser scanning microscopy. While the wild-type strain heavily colonized root surfaces, the nfrA mutant did not colonize lettuce roots, although it was not impaired in growth in laboratory cultures, biofilm formation and swarming motility on agar plates. The RBAM17410 gene, occurring in only a few members of the B. subtilis species complex, was directly involved in plant growth promotion. None of the mutant strains were affected in producing the plant growth hormone auxin. We hypothesize that the nfrA gene product is essential for overcoming the stress caused by plant response towards bacterial root colonization.

Indexed as

MutagenesisBacillusBacterial ProteinsBiofilmsDNA Transposable ElementsGene LibraryGenetic Complementation TestGreen Fluorescent ProteinsLactucaMicroscopy, ConfocalMicroscopy, Electron, ScanningNitroreductasesOxidative StressPlant RootsRhizosphereBacterial ProteinsDNA Transposable ElementsGreen Fluorescent ProteinsNfrA1 protein, Bacillus subtilisNitroreductases

Identifiers

PMID24847778
PMCPMC4029887
OpenAlexW2008199833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.