Evidence map›Paper›PMID 24847316›Full record

ArticleFrontiers in microbiology2014

Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach.

Ana B Fernández, Blanca Vera-Gargallo, Cristina Sánchez-Porro, Rohit Ghai, R Thane Papke, Francisco Rodriguez-Valera, Antonio Ventosa

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
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  15. Article
  16. Cultivation of halophilic archaea (classMarine life science & technology · 2021
    Review
  17. Article
  18. Genomic Insights Into New Species of the GenusFrontiers in microbiology · 2021
    Article
  19. Microorganisms · 2020
    Article
  20. Microorganisms · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ana B FernándezDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla Sevilla, Spain.
Blanca Vera-GargalloDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla Sevilla, Spain.
Cristina Sánchez-PorroDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla Sevilla, Spain.
Rohit GhaiEvolutionary Genomics Group, Departamento de Producción Vegetal y Microbiología, Universidad Miguel Hernández, San Juan de Alicante Alicante, Spain.
R Thane PapkeDepartment of Molecular and Cell Biology, University of Connecticut Storrs, CT, USA.
Francisco Rodriguez-ValeraEvolutionary Genomics Group, Departamento de Producción Vegetal y Microbiología, Universidad Miguel Hernández, San Juan de Alicante Alicante, Spain.
Antonio VentosaDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla Sevilla, Spain.
Universidad de Sevilla · ESUniversitat de Miguel Hernández d'Elx · ESUniversity of Connecticut · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We analyzed the prokaryotic community structure of a saltern pond with 21% total salts located in Isla Cristina, Huelva, Southwest Spain, close to the Atlantic ocean coast. For this purpose, we constructed a metagenome (designated as IC21) obtained by pyrosequencing consisting of 486 Mb with an average read length of 397 bp and compared it with other metagenomic datasets obtained from ponds with 19, 33, and 37% total salts acquired from Santa Pola marine saltern, located in Alicante, East Spain, on the Mediterranean coast. Although the salinity in IC21 is closer to the pond with 19% total salts from Santa Pola saltern (designated as SS19), IC21 is more similar at higher taxonomic levels to the pond with 33% total salts from Santa Pola saltern (designated as SS33), since both are predominated by the phylum Euryarchaeota. However, there are significant differences at lower taxonomic levels where most sequences were related to the genus Halorubrum in IC21 and to Haloquadratum in SS33. Within the Bacteroidetes, the genus Psychroflexus is the most abundant in IC21 while Salinibacter dominates in SS33. Sequences related to bacteriorhodopsins and halorhodopsins correlate with the abundance of Haloquadratum in Santa Pola SS19 to SS33 and of Halorubrum in Isla Cristina IC21 dataset, respectively. Differences in composition might be attributed to local ecological conditions since IC21 showed a decrease in the number of sequences related to the synthesis of compatible solutes and in the utilization of phosphonate.

Indexed as

haloarchaeahalophilic bacteriametagenomicsprokaryotic diversitysaltern

Identifiers

PMID24847316
PMCPMC4021199
OpenAlexW2010636153

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.