Evidence map›Paper›PMID 24846669›Full record

ArticleJournal of molecular biology2015

SecA drives transmembrane insertion of RodZ, an unusual single-span membrane protein.

Swati Rawat, Lu Zhu, Eric Lindner, Ross E Dalbey, Stephen H White

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  10. Article
  11. Article
  12. Timing and specificity of cotranslational nascent protein modification in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. SecA-a New Twist in the Tale.Journal of bacteriology · 2017
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Swati RawatDepartment of Physiology and Biophysics and the Center for Biomembrane Systems, University of California at Irvine, Irvine, CA 92697-4560, USA.
Lu ZhuDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
Eric LindnerDepartment of Physiology and Biophysics and the Center for Biomembrane Systems, University of California at Irvine, Irvine, CA 92697-4560, USA.
Ross E DalbeyDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
Stephen H WhiteDepartment of Physiology and Biophysics and the Center for Biomembrane Systems, University of California at Irvine, Irvine, CA 92697-4560, USA. Electronic address: stephen.white@uci.edu.
University of California, Irvine · USThe Ohio State University · US

Funding

Membrane Protein Folding and AssemblyR01GM074637 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI WHITE, STEPHEN H. · 2006 to 2020
$4.5M
NIGMS NIH HHS GM074637NIGMS NIH HHS R01 GM074637
6 · The paper itself

Abstract

The transmembrane (TM) helices of most type II single-span membrane proteins (S-SMPs) of Escherichia coli occur near the N-terminus, where the cell's targeting mechanisms can readily identify it as it emerges from the ribosome. However, the TM helices of a few S-SMPs, such as RodZ, occur a hundred or more residues downstream from the N-terminus, which raises fundamental questions about targeting and assembly. Because of RodZ's novelty and potential usefulness for understanding TM helix insertion in vivo, we examined its membrane targeting and assembly. We used RodZ constructs containing immunotags before the TM domain to assess membrane insertion using proteinase K digestion. We confirmed the N(in)-C(out) (type II) topology of RodZ and established the absence of a targeting signal other than the TM domain. RodZ was not inserted into the membrane under SecA depletion conditions or in the presence of sodium azide, which is known to inhibit SecA. Insertion failed when the TM proton gradient was abolished with Carbonyl cyanide m-chlorophenyl hydrazone. Insertion also failed when RodZ was expressed in SecE-depleted E. coli, indicating that the SecYEG translocon is required for RodZ assembly. Protease accessibility assays of RodZ in other E. coli depletion strains revealed that insertion is independent of SecB, YidC, and SecD/F. Insertion was found to be only weakly dependent on the signal recognition particle pathway: insertion was weakly dependent on the Ffh but independent of FtsY. We conclude that membrane insertion of RodZ requires only the SecYEG translocon, the SecA ATPase motor, and the TM proton motive force.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsCell MembraneCytoskeletal ProteinsEscherichia coliEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsProtein TransportRibosomesSecA ProteinsSEC Translocation ChannelsSignal Recognition ParticleAdenosine TriphosphatasesBacterial ProteinsCytoskeletal ProteinsEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsRodZ protein, E coliSecA ProteinsSEC Translocation ChannelsSignal Recognition Particlemembrane protein assemblySecA ATPaseSecYEG translocasesingle-span membrane proteins

Identifiers

PMID24846669
PMCPMC4233018
OpenAlexW2165517953

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.