Evidence map›Paper›PMID 24845514›Full record

ArticleJournal of biosciences2014

Phylogenetic diversity of Mesorhizobium in chickpea.

Dong Hyun Kim, Mayank Kaashyap, Abhishek Rathore, Roma R Das, Swathi Parupalli, Hari D Upadhyaya, S Gopalakrishnan, Pooran M Gaur, Sarvjeet Singh, Jagmeet Kaur and 2 more

Abstract read
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In one paragraph

Article in Journal of biosciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 48 citations in OpenAlex.

  1. Population and genetic diversity of rhizobia nodulating chickpea in Indo-Gangetic plains of India.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Diversity of rhizobial and non-rhizobial bacteria nodulating wild ancestors of grain legume crop plants.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Article
  8. Review
  9. Review
  10. Frontiers in plant science · 2020
    Article
  11. Review
  12. Article
  13. Review
  14. The SoybeanFrontiers in plant science · 2017
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Dong Hyun KimInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru 502 324, India.
Mayank Kaashyap
Abhishek Rathore
Roma R Das
Swathi Parupalli
Hari D Upadhyaya
S Gopalakrishnan
Pooran M Gaur
Sarvjeet Singh
Jagmeet Kaur
Mohammad Yasin
Rajeev K Varshney
International Crops Research Institute for the Semi-Arid Tropics · INInternational Crops Research Institute for the Semi-Arid Tropics · MLPunjab Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crop domestication, in general, has reduced genetic diversity in cultivated gene pool of chickpea (Cicer arietinum) as compared with wild species (C. reticulatum, C. bijugum). To explore impact of domestication on symbiosis, 10 accessions of chickpeas, including 4 accessions of C. arietinum, and 3 accessions of each of C. reticulatum and C. bijugum species, were selected and DNAs were extracted from their nodules. To distinguish chickpea symbiont, preliminary sequences analysis was attempted with 9 genes (16S rRNA, atpD, dnaJ, glnA, gyrB, nifH, nifK, nodD and recA) of which 3 genes (gyrB, nifK and nodD) were selected based on sufficient sequence diversity for further phylogenetic analysis. Phylogenetic analysis and sequence diversity for 3 genes demonstrated that sequences from C. reticulatum were more diverse. Nodule occupancy by dominant symbiont also indicated that C. reticulatum (60 percent) could have more various symbionts than cultivated chickpea (80 percent). The study demonstrated that wild chickpeas (C. reticulatum) could be used for selecting more diverse symbionts in the field conditions and it implies that chickpea domestication affected symbiosis negatively in addition to reducing genetic diversity.

Indexed as

PhylogenyCicerCrops, AgriculturalDNA, FungalGenetic VariationMesorhizobiumPopulation DynamicsRNA, Ribosomal, 16SSequence Analysis, DNASymbiosisDNA, FungalRNA, Ribosomal, 16S

Identifiers

PMID24845514
OpenAlexW2115965114

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.