Evidence map›Paper›PMID 24844638›Full record

ArticlePhysiological reports2014

Systematic family-wide analysis of sodium bicarbonate cotransporter NBCn1/SLC4A7 interactions with PDZ scaffold proteins.

Hye Jeong Lee, Min Hyung Kwon, Soojung Lee, Randy A Hall, C Chris Yun, Inyeong Choi

Open access · goldAbstract read
In one paragraph

Article in Physiological reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Potential Theranostic Roles of SLC4 Molecules in Human Diseases.International journal of molecular sciences · 2023
    Review
  5. Bicarbonate-Independent Sodium Conductance of Na/HCOCurrent issues in molecular biology · 2022
    Article
  6. Article
  7. Deletion of the Na/HCOScientific reports · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hye Jeong LeeDepartment of Pediatrics, Division of Hematology and Oncology, Vanderbilt University, Nashville, Tennessee, USA.
Min Hyung KwonDepartment of Physiology, Emory University School of Medicine, Atlanta, Georgia, USA.
Soojung LeeDepartment of Physiology, Emory University School of Medicine, Atlanta, Georgia, USA.
Randy A HallDepartment of Pharmacology, Emory University School of Medicine, Atlanta, Georgia, USA.
C Chris YunDepartment of Medicine, Division of Digestive Disease, Emory University School of Medicine, Atlanta, Georgia, USA.
Inyeong ChoiDepartment of Physiology, Emory University School of Medicine, Atlanta, Georgia, USA.
Emory University · USVanderbilt University · US

Funding

Regulation of NHE3 by glucocorticoids, SGK1 and NHERF2R01DK061418 · NIDDK · EMORY UNIVERSITY · PI YUN, CHANGHYON CHRIS · 2003 to 2015
$4.0M
LPA Receptor Signaling in Colonic EpitheliaR01DK071597 · NIDDK · EMORY UNIVERSITY · PI YUN, CHANGHYON CHRIS · 2007 to 2015
$3.0M
Structure/function analysis of the na/bicarbonate cotransportersR01GM078502 · NIGMS · EMORY UNIVERSITY · PI CHOI, INYEONG · 2007 to 2011
$1.6M
PDZ scaffold regulation of astrocytic glutamate receptors and transportersR01NS055179 · NINDS · EMORY UNIVERSITY · PI HALL, RANDY A. · 2008 to 2012
$1.5M
NIDDK NIH HHS R01 DK061418NIDDK NIH HHS R01 DK071597NIGMS NIH HHS R01 GM078502NINDS NIH HHS R01 NS055179
6 · The paper itself

Abstract

NBCn1 (SLC4A7) plays a role in transepithelial HCO3 (-) movement and intracellular pH maintenance in many tissues. In this study, we searched PDZ proteins capable of binding to NBCn1. We screened a protein array membrane, on which 96 different class I PDZ protein peptides were blotted, with the C-terminal domain of NBCn1 fused to GST. Thirteen proteins were identified in these screens: MAGI-3, NHERF-1, NHERF-2, PSD-95, chapsyn-110, ERBIN, MALS-1, densin-180, syntrophins α1, β2, γ2, MUPP1, and PDZK1. After determining these binding partners, we analyzed the database of known and predicted protein interactions to obtain an NBCn1 interaction network. The network shows NBCn1 being physically and functionally associated with a variety of membrane and cytosolic proteins via the binding partners. We then focused on syntrophin γ2 to examine the molecular and functional interaction between NBCn1 and one of the identified binding partners in the Xenopus oocyte expression system. GST/NBCn1 pulled down syntrophin γ2 and conversely GST/syntrophin γ2 pulled down NBCn1. Moreover, syntrophin γ2 increased intracellular pH recovery, from acidification, mediated by NBCn1's Na/HCO3 cotransport. Syntrophin γ2 also increased an ionic conductance produced by NBCn1 channel-like activity. Thus, syntrophin γ2 regulates NBCn1 activity. In conclusion, this study demonstrates that NBCn1 binds to many PDZ proteins, which in turn may allow the transporter to associate with other physiologically important proteins.

Indexed as

Bicarbonate transporterpHprotein interactionSLC4A7Xenopus oocyte

Identifiers

PMID24844638
PMCPMC4098744
OpenAlexW2127746676

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.