Evidence map›Paper›PMID 24844180›Full record

ArticleBiochimica et biophysica acta2014

Distinct functions of alternatively spliced isoforms encoded by zebrafish mef2ca and mef2cb.

M Ganassi, S Badodi, A Polacchini, F Baruffaldi, R Battini, S M Hughes, Y Hinits, S Molinari

Open access · hybridAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  6. Review
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  11. Common CarpGenes · 2019
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

M GanassiUniversity of Modena and Reggio Emilia, Department of Life Sciences, Italy; Randall Division of Cell and Molecular Biophysics, New Hunt's House, Guy's Campus, King's College London, SE1 1UL, UK.
S BadodiUniversity of Modena and Reggio Emilia, Department of Life Sciences, Italy.
A PolacchiniUniversity of Modena and Reggio Emilia, Department of Life Sciences, Italy.
F BaruffaldiUniversity of Modena and Reggio Emilia, Department of Life Sciences, Italy.
R BattiniUniversity of Modena and Reggio Emilia, Department of Life Sciences, Italy.
S M HughesRandall Division of Cell and Molecular Biophysics, New Hunt's House, Guy's Campus, King's College London, SE1 1UL, UK.
Y HinitsRandall Division of Cell and Molecular Biophysics, New Hunt's House, Guy's Campus, King's College London, SE1 1UL, UK. Electronic address: yaniv.hinits@kcl.ac.uk.
S MolinariUniversity of Modena and Reggio Emilia, Department of Life Sciences, Italy. Electronic address: susanna.molinari@unimore.it.
University of Modena and Reggio Emilia · ITKing's College London · GB

Funding

Medical Research Council G1001029
6 · The paper itself

Abstract

In mammals, an array of MEF2C proteins is generated by alternative splicing (AS), yet specific functions have not been ascribed to each isoform. Teleost fish possess two MEF2C paralogues, mef2ca and mef2cb. In zebrafish, the Mef2cs function to promote cardiomyogenic differentiation and myofibrillogenesis in nascent skeletal myofibers. We found that zebrafish mef2ca and mef2cb are alternatively spliced in the coding exons 4-6 region and these splice variants differ in their biological activity. Of the two, mef2ca is more abundantly expressed in developing skeletal muscle, its activity is tuned through zebrafish development by AS. By 24hpf, we found the prevalent expression of the highly active full length protein in differentiated muscle in the somites. The splicing isoform of mef2ca that lacks exon 5 (mef2ca 4-6), encodes a protein that has 50% lower transcriptional activity, and is found mainly earlier in development, before muscle differentiation. mef2ca transcripts including exon 5 (mef2ca 4-5-6) are present early in the embryo. Over-expression of this isoform alters the expression of genes involved in early dorso-ventral patterning of the embryo such as chordin, nodal related 1 and goosecoid, and induces severe developmental defects. AS of mef2cb generates a long splicing isoform in the exon 5 region (Mef2cbL) that predominates during somitogenesis. Mef2cbL contains an evolutionarily conserved domain derived from exonization of a fragment of intron 5, which confers the ability to induce ectopic muscle in mesoderm upon over-expression of the protein. Taken together, the data show that AS is a significant regulator of Mef2c activity.

Indexed as

Alternative SplicingAnimalsCell DifferentiationGene Expression Regulation, DevelopmentalGlycoproteinsGoosecoid ProteinIntercellular Signaling Peptides and ProteinsMEF2 Transcription FactorsMuscle DevelopmentMuscle ProteinsNodal Signaling LigandsProtein IsoformsRNA SplicingZebrafishZebrafish ProteinschordinGlycoproteinsGoosecoid Proteingsc protein, zebrafishIntercellular Signaling Peptides and ProteinsMef2ca protein, zebrafishMef2cb protein, zebrafishMEF2 Transcription FactorsMuscle Proteinsndr1 protein, zebrafishNodal Signaling LigandsProtein IsoformsZebrafish ProteinsAlternative splicingDevelopmentMef2caMef2cbSkeletal muscleZebrafish

Identifiers

PMID24844180
PMCPMC4064114
OpenAlexW2018701349

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.