Evidence map›Paper›PMID 24843179›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Cryo-electron microscopy of tubular arrays of HIV-1 Gag resolves structures essential for immature virus assembly.

Tanmay A M Bharat, Luis R Castillo Menendez, Wim J H Hagen, Vanda Lux, Sebastien Igonet, Martin Schorb, Florian K M Schur, Hans-Georg Kräusslich, John A G Briggs

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 107 citations in OpenAlex.

  1. Article
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  4. The capsid revolution.Journal of molecular cell biology · 2024
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  7. Cryo-electron tomography to study viral infection.Biochemical Society transactions · 2023
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  10. Antiviral Properties of HIV-1 Capsid Inhibitor GSK878.Antimicrobial agents and chemotherapy · 2023
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  19. Article
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Tanmay A M BharatStructural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany;Molecular Medicine Partnership Unit, European Molecular Biology Laboratory/Universitätsklinikum Heidelberg, Heidelberg, Germany;Structural Studies Division, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom;
Luis R Castillo MenendezMolecular Medicine Partnership Unit, European Molecular Biology Laboratory/Universitätsklinikum Heidelberg, Heidelberg, Germany;Department of Infectious Diseases, Virology, Universitätsklinikum Heidelberg, 69120 Heidelberg, Germany;
Wim J H HagenStructural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany;
Vanda LuxDepartment of Infectious Diseases, Virology, Universitätsklinikum Heidelberg, 69120 Heidelberg, Germany;
Sebastien IgonetUnité de Virologie Structurale, Departement Virologie, Institut Pasteur, 75724 Paris, France; andUnité Mixte de Recherche 3569, Centre National de la Recherche Scientifique, 75724 Paris, France.
Martin SchorbStructural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany;
Florian K M SchurStructural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany;Molecular Medicine Partnership Unit, European Molecular Biology Laboratory/Universitätsklinikum Heidelberg, Heidelberg, Germany;
Hans-Georg KräusslichMolecular Medicine Partnership Unit, European Molecular Biology Laboratory/Universitätsklinikum Heidelberg, Heidelberg, Germany;Department of Infectious Diseases, Virology, Universitätsklinikum Heidelberg, 69120 Heidelberg, Germany; hans-georg.kraeusslich@med.uni-heidelberg.de john.briggs@embl.de.
John A G BriggsStructural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany;Molecular Medicine Partnership Unit, European Molecular Biology Laboratory/Universitätsklinikum Heidelberg, Heidelberg, Germany; hans-georg.kraeusslich@med.uni-heidelberg.de john.briggs@embl.de.
European Molecular Biology Laboratory · DEEuropean Molecular Biology Laboratory · DEUniversity Hospital Heidelberg · DEHeidelberg University · DEInstitut Pasteur · FRMRC Laboratory of Molecular Biology · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The assembly of HIV-1 is mediated by oligomerization of the major structural polyprotein, Gag, into a hexameric protein lattice at the plasma membrane of the infected cell. This leads to budding and release of progeny immature virus particles. Subsequent proteolytic cleavage of Gag triggers rearrangement of the particles to form mature infectious virions. Obtaining a structural model of the assembled lattice of Gag within immature virus particles is necessary to understand the interactions that mediate assembly of HIV-1 particles in the infected cell, and to describe the substrate that is subsequently cleaved by the viral protease. An 8-Å resolution structure of an immature virus-like tubular array assembled from a Gag-derived protein of the related retrovirus Mason-Pfizer monkey virus (M-PMV) has previously been reported, and a model for the arrangement of the HIV-1 capsid (CA) domains has been generated based on homology to this structure. Here we have assembled tubular arrays of a HIV-1 Gag-derived protein with an immature-like arrangement of the C-terminal CA domains and have solved their structure by using hybrid cryo-EM and tomography analysis. The structure reveals the arrangement of the C-terminal domain of CA within an immature-like HIV-1 Gag lattice, and provides, to our knowledge, the first high-resolution view of the region immediately downstream of CA, which is essential for assembly, and is significantly different from the respective region in M-PMV. Our results reveal a hollow column of density for this region in HIV-1 that is compatible with the presence of a six-helix bundle at this position.

Indexed as

Capsid ProteinsCryoelectron MicroscopyCrystallography, X-Raygag Gene Products, Human Immunodeficiency VirusHIV-1NanotubesProtein Structure, SecondaryProtein Structure, TertiaryVirionCapsid Proteinsgag Gene Products, Human Immunodeficiency Viruscryo-electron tomographyelectron cryomicroscopyhelical reconstructionSP1

Identifiers

PMID24843179
PMCPMC4050629
OpenAlexW1994410560

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.