Evidence map›Paper›PMID 24843008›Full record

ArticleeLife2014

p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Michal Krawczyk, Beverly M Emerson

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 358 citations in OpenAlex.

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  4. Direct roles of long non-coding RNAs in transcription activation.Nature structural & molecular biology · 2026
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117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Michal KrawczykRegulatory Biology Laboratory, Salk Institute for Biological Studies, La Jolla, United States.
Beverly M EmersonRegulatory Biology Laboratory, Salk Institute for Biological Studies, La Jolla, United States emerson@salk.edu.
Salk Institute for Biological Studies · US

Funding

Deregulation of CTCF in Epigenetic Gene Silencing in Human CancersR01CA159354 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI EMERSON, BEVERLY MARIE · 2011 to 2015
$1.9M
NCI NIH HHS R01 CA159354
6 · The paper itself

Abstract

Deregulated expression of COX-2 has been causally linked to development, progression, and outcome of several types of human cancer. We describe a novel fundamental level of transcriptional control of COX-2 expression. Using primary human mammary epithelial cells and monocyte/macrophage cell lines, we show that the chromatin boundary/insulator factor CTCF establishes an open chromatin domain and induces expression of a long non-coding RNA within the upstream promoter region of COX-2. Upon induction of COX-2 expression, the lncRNA associates with p50, a repressive subunit of NF-κB, and occludes it from the COX-2 promoter, potentially facilitating interaction with activation-competent NF-κB p65/p50 dimers. This enables recruitment of the p300 histone acetyltransferase, a domain-wide increase in histone acetylation and assembly of RNA Polymerase II initiation complexes. Our findings reveal an unexpected mechanism of gene control by lncRNA-mediated repressor occlusion and identify the COX-2-lncRNA, PACER, as a new potential target for COX-2-modulation in inflammation and cancer.DOI: http://dx.doi.org/10.7554/eLife.01776.001.

Indexed as

Gene Expression RegulationTranscription, GeneticCells, CulturedCyclooxygenase 2Epithelial CellsHumansMonocytesNF-kappa B p50 SubunitRNA, UntranslatedCyclooxygenase 2NF-kappa B p50 SubunitPTGS2 protein, humanRNA, UntranslatedCTCFCyclooxygenase 2long non-coding RNANF-κBp300transcription

Identifiers

PMID24843008
PMCPMC4017649
OpenAlexW2140182828

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.