Evidence map›Paper›PMID 24842778›Full record

ArticlePloS one2014

Proteomic identification of novel differentiation plasma protein markers in hypobaric hypoxia-induced rat model.

Yasmin Ahmad, Narendra K Sharma, Mohammad Faiz Ahmad, Manish Sharma, Iti Garg, Kalpana Bhargava

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  5. SEPDB: a database of secreted proteins.Database : the journal of biological databases and curation · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yasmin AhmadPeptide and Proteomics Division, DIPAS, DRDO, Ministry of Defence, Delhi, India.
Narendra K SharmaPeptide and Proteomics Division, DIPAS, DRDO, Ministry of Defence, Delhi, India.
Mohammad Faiz AhmadDepartment of Chemistry, Jamia Millia Islamia, New Delhi, India.
Manish SharmaPeptide and Proteomics Division, DIPAS, DRDO, Ministry of Defence, Delhi, India.
Iti GargDepartment of Genomics, DIPAS, DRDO, Ministry of Defence, Delhi, India.
Kalpana BhargavaPeptide and Proteomics Division, DIPAS, DRDO, Ministry of Defence, Delhi, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHypobaric hypoxia causes complex changes in the expression of genes, including stress related genes and corresponding proteins that are necessary to maintain homeostasis. Whereas most prior studies focused on single proteins, newer methods allowing the simultaneous study of many proteins could lead to a better understanding of complex and dynamic changes that occur during the hypobaric hypoxia.

methodsIn this study we investigated the temporal plasma protein alterations of rat induced by hypobaric hypoxia at a simulated altitude of 7620 m (25,000 ft, 282 mm Hg) in a hypobaric chamber. Total plasma proteins collected at different time points (0, 6, 12 and 24 h), separated by two-dimensional electrophoresis (2-DE) and identified using matrix assisted laser desorption ionization time of flight (MALDI-TOF/TOF). Biological processes that were enriched in the plasma proteins during hypobaric hypoxia were identified using Gene Ontology (GO) analysis. According to their properties and obvious alterations during hypobaric hypoxia, changes of plasma concentrations of Ttr, Prdx-2, Gpx -3, Apo A-I, Hp, Apo-E, Fetub and Nme were selected to be validated by Western blot analysis.

resultsBioinformatics analysis of 25 differentially expressed proteins showed that 23 had corresponding candidates in the database. The expression patterns of the eight selected proteins observed by Western blot were in agreement with 2-DE results, thus confirming the reliability of the proteomic analysis. Most of the proteins identified are related to cellular defense mechanisms involving anti-inflammatory and antioxidant activity. Their presence reflects the consequence of serial cascades initiated by hypobaric hypoxia. CONCLUSION/SIGNIFICANCE: This study provides information about the plasma proteome changes induced in response to hypobaric hypoxia and thus identification of the candidate proteins which can act as novel biomarkers.

Indexed as

Air PressureAnalysis of VarianceAnimalsBiomarkersBlood ProteinsBlotting, WesternComputational BiologyElectrophoresis, Gel, Two-DimensionalGene Expression RegulationGene OntologyHypoxiaRatsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTime FactorsBiomarkersBlood Proteins

Identifiers

PMID24842778
PMCPMC4026414

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.