Evidence map›Paper›PMID 24839125›Full record

ArticleEukaryotic cell2014

Trypanosoma brucei translation initiation factor homolog EIF4E6 forms a tripartite cytosolic complex with EIF4G5 and a capping enzyme homolog.

Eden R Freire, Amaranta M Malvezzi, Ajay A Vashisht, Joanna Zuberek, Edwin A Saada, Gerasimos Langousis, Janaína D F Nascimento, Danielle Moura, Edward Darzynkiewicz, Kent Hill and 4 more

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Characterization of an Atypical eIF4E Ortholog inInternational journal of molecular sciences · 2021
    Article
  8. LeishIF4E-5 Is a Promastigote-Specific Cap-Binding Protein inInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Review
  11. Computational study on the allosteric mechanism ofComputational and structural biotechnology journal · 2021
    Article
  12. Article
  13. Regulation of Translation in the Protozoan ParasiteInternational journal of molecular sciences · 2020
    Review
  14. eIF4E and Interactors from Unicellular Eukaryotes.International journal of molecular sciences · 2020
    Review
  15. Crystal structure of the MIF4G domain of the Trypanosoma cruzi translation initiation factor EIF4G5.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. A recap of RNA recapping.Wiley interdisciplinary reviews. RNA · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Eden R FreireDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA.
Amaranta M MalvezziDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA Department of Microbiology, Centro de Pesquisas Aggeu Magalhães, Fundaçao Oswaldo Cruz, Recife, PE, Brazil.
Ajay A VashishtDepartment of Biological Chemistry, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA.
Joanna ZuberekDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Warsaw, Poland.
Edwin A SaadaDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA.
Gerasimos LangousisDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA.
Janaína D F NascimentoDepartment of Microbiology, Centro de Pesquisas Aggeu Magalhães, Fundaçao Oswaldo Cruz, Recife, PE, Brazil.
Danielle MouraDepartment of Microbiology, Centro de Pesquisas Aggeu Magalhães, Fundaçao Oswaldo Cruz, Recife, PE, Brazil.
Edward DarzynkiewiczDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Warsaw, Poland Centre of New Technologies, University of Warsaw, Warsaw, Poland.
Kent HillDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA.
Osvaldo P de Melo NetoDepartment of Microbiology, Centro de Pesquisas Aggeu Magalhães, Fundaçao Oswaldo Cruz, Recife, PE, Brazil.
James A WohlschlegelDepartment of Biological Chemistry, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA.
Nancy R SturmDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA.
David A CampbellDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA dc@ucla.edu.
University of California, Los Angeles · USFundação Oswaldo Cruz · BRUniversity of Warsaw · PL

Funding

Biochemical and Functional Analysis of TrypaninR01AI052348 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HILL, KENT L · 2002 to 2023
$7.4M
Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
Kinetoplastid SL RNA BiogenesisR01AI056034 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2004 to 2013
$3.7M
Translational partitioning of the SL RNAR21AI073806 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2009 to 2010
$424k
Biochemical and Functional Analysis of TrypaninR56AI052348 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HILL, KENT L · 2007 to 2007
$374k
Cap binding and gene expression in trypanosomesR03TW009035 · FIC · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2012 to 2014
$175k
FIC NIH HHS R03 TW009035FIC NIH HHS TW009035NIAID NIH HHS AI056034NIAID NIH HHS AI073806NIAID NIH HHS R01 AI052348NIAID NIH HHS R01 AI056034NIAID NIH HHS R21 AI073806NIAID NIH HHS R56 AI052348NIGMS NIH HHS GM089778NIGMS NIH HHS R01 GM089778
6 · The paper itself

Abstract

Trypanosomes lack the transcriptional control characteristic of the majority of eukaryotes that is mediated by gene-specific promoters in a one-gene-one-promoter arrangement. Rather, their genomes are transcribed in large polycistrons with no obvious functional linkage. Posttranscriptional regulation of gene expression must thus play a larger role in these organisms. The eIF4E homolog TbEIF4E6 binds mRNA cap analogs in vitro and is part of a complex in vivo that may fulfill such a role. Knockdown of TbEIF4E6 tagged with protein A-tobacco etch virus protease cleavage site-protein C to approximately 15% of the normal expression level resulted in viable cells that displayed a set of phenotypes linked to detachment of the flagellum from the length of the cell body, if not outright flagellum loss. While these cells appeared and behaved as normal under stationary liquid culture conditions, standard centrifugation resulted in a marked increase in flagellar detachment. Furthermore, the ability of TbEIF4E6-depleted cells to engage in social motility was reduced. The TbEIF4E6 protein forms a cytosolic complex containing a triad of proteins, including the eIF4G homolog TbEIF4G5 and a hypothetical protein of 70.3 kDa, referred to as TbG5-IP. The TbG5-IP analysis revealed two domains with predicted secondary structures conserved in mRNA capping enzymes: nucleoside triphosphate hydrolase and guanylyltransferase. These complex members have the potential for RNA interaction, either via the 5' cap structure for TbEIF4E6 and TbG5-IP or through RNA-binding domains in TbEIF4G5. The associated proteins provide a signpost for future studies to determine how this complex affects capped RNA molecules.

Indexed as

Binding SitesCell MovementEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4GFlagellamRNA GuanylyltransferasesNucleotidyltransferasesProtein BindingProtozoan ProteinsTrypanosoma brucei bruceiEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4GmRNA GuanylyltransferasesNucleotidyltransferasesProtozoan Proteins

Identifiers

PMID24839125
PMCPMC4135740
OpenAlexW2139394837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.