ArticleNucleic acids research2014
The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed.
- Continuous Automated Model EvaluatiOn (CAMEO)-Perspectives on the future of fully automated evaluation of structure prediction methods.Proteins · 2021Article
- Assessment of protein model structure accuracy estimation in CASP14: Old and new challenges.Proteins · 2021Article
- Current Approaches in Supersecondary Structures Investigation.International journal of molecular sciences · 2021Review
- Regulation of Glycine Cleavage and Detoxification by a Highly Conserved Glycine Riboswitch in Burkholderia spp.Current microbiology · 2021Article
- Introducing "best single template" models as reference baseline for the Continuous Automated Model Evaluation (CAMEO).Proteins · 2019Article
- Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning.Proteins · 2019Article
- Comparative analysis of methods for evaluation of protein models against native structures.Bioinformatics (Oxford, England) · 2019Article
- Molecular dynamics of Middle East Respiratory Syndrome Coronavirus (MERS CoV) fusion heptad repeat trimers.Computational biology and chemistry · 2018Article
- RNAssess--a web server for quality assessment of RNA 3D structures.Nucleic acids research · 2015Article
Corrections and comments
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Authors and funding
2 authors.
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Abstract
The Contact Area Difference score (CAD-score) web server provides a universal framework to compute and analyze discrepancies between different 3D structures of the same biological macromolecule or complex. The server accepts both single-subunit and multi-subunit structures and can handle all the major types of macromolecules (proteins, RNA, DNA and their complexes). It can perform numerical comparison of both structures and interfaces. In addition to entire structures and interfaces, the server can assess user-defined subsets. The CAD-score server performs both global and local numerical evaluations of structural differences between structures or interfaces. The results can be explored interactively using sortable tables of global scores, profiles of local errors, superimposed contact maps and 3D structure visualization. The web server could be used for tasks such as comparison of models with the native (reference) structure, comparison of X-ray structures of the same macromolecule obtained in different states (e.g. with and without a bound ligand), analysis of nuclear magnetic resonance (NMR) structural ensemble or structures obtained in the course of molecular dynamics simulation. The web server is freely accessible at: http://www.ibt.lt/bioinformatics/cad-score.
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