Evidence map›Paper›PMID 24838245›Full record

ArticleThe Journal of biological chemistry2014

Calpain 5 is highly expressed in the central nervous system (CNS), carries dual nuclear localization signals, and is associated with nuclear promyelocytic leukemia protein bodies.

Ranjana Singh, M Kathryn Brewer, Charles B Mashburn, Dingyuan Lou, Vimala Bondada, Brantley Graham, James W Geddes

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. The C2 domain of calpain 5 contributes to enzyme activation and membrane localization.Biochimica et biophysica acta. Molecular cell research · 2021
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. The role of lysosome in regulated necrosis.Acta pharmaceutica Sinica. B · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ranjana SinghFrom the Spinal Cord and Brain Injury Research Center and the Department of Anatomy and Neurobiology, University of Kentucky, Lexington, Kentucky 40536.
M Kathryn BrewerFrom the Spinal Cord and Brain Injury Research Center and.
Charles B MashburnFrom the Spinal Cord and Brain Injury Research Center and.
Dingyuan LouFrom the Spinal Cord and Brain Injury Research Center and.
Vimala BondadaFrom the Spinal Cord and Brain Injury Research Center and.
Brantley GrahamFrom the Spinal Cord and Brain Injury Research Center and.
James W GeddesFrom the Spinal Cord and Brain Injury Research Center and the Department of Anatomy and Neurobiology, University of Kentucky, Lexington, Kentucky 40536 jgeddes@uky.edu.
University of Kentucky · US

Funding

UK Spinal Cord &Brain Injury Research Center Core GrantP30NS051220 · NINDS · UNIVERSITY OF KENTUCKY · PI HALL, EDWARD D. · 2005 to 2015
$6.4M
Role of calpastatin in modulating function following TBIP01NS058484 · NINDS · UNIVERSITY OF KENTUCKY · PI HALL, EDWARD D. · 2007 to 2011
$4.8M
NINDS NIH HHS P01 NS058484NINDS NIH HHS P01NS058484NINDS NIH HHS P30 NS051220NINDS NIH HHS P30NS051220
6 · The paper itself

Abstract

Calpain 5 (CAPN5) is a non-classical member of the calpain family. It lacks the EF hand motif characteristic of classical calpains but retains catalytic and Ca(2+) binding domains, and it contains a unique C-terminal domain. TRA-3, an ortholog of CAPN5, has been shown to be involved in necrotic cell death in Caenorhabditis elegans. CAPN5 is expressed throughout the CNS, but its expression relative to other calpains and subcellular distribution has not been investigated previously. Based on relative mRNA levels, Capn5 is the second most highly expressed calpain in the rat CNS, with Capn2 mRNA being the most abundant. Unlike classical calpains, CAPN5 is a non-cytosolic protein localized to the nucleus and extra-nuclear locations. CAPN5 possesses two nuclear localization signals (NLS): an N-terminal monopartite NLS and a unique bipartite NLS closer to the C terminus. The C-terminal NLS contains a SUMO-interacting motif that contributes to nuclear localization, and mutation or deletion of both NLS renders CAPN5 exclusively cytosolic. Dual NLS motifs are common among transcription factors. Interestingly, CAPN5 is found in punctate domains associated with promyelocytic leukemia (PML) protein within the nucleus. PML nuclear bodies are implicated in transcriptional regulation, cell differentiation, cellular response to stress, viral defense, apoptosis, and cell senescence as well as protein sequestration, modification, and degradation. The roles of nuclear CAPN5 remain to be determined.

Indexed as

Amino Acid MotifsAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCalpainCell NucleusCentral Nervous SystemGene Expression Regulation, EnzymologicIntranuclear Inclusion BodiesMaleMiceMice, TransgenicNuclear Localization SignalsNuclear ProteinsPromyelocytic Leukemia ProteinRatsCaenorhabditis elegans ProteinsCalpaincalpain 5, ratCapn5 protein, mouseNuclear Localization SignalsNuclear ProteinsPml protein, mousePromyelocytic Leukemia ProteinTranscription FactorsTumor Suppressor ProteinsCalpainNuclear TransportProteaseSUMO-interacting Motif (SIM)SUMOylation

Identifiers

PMID24838245
PMCPMC4094050
OpenAlexW1974372961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.