Evidence map›Paper›PMID 24838242›Full record

ArticleThe Journal of biological chemistry2014

Error-prone replication bypass of the primary aflatoxin B1 DNA adduct, AFB1-N7-Gua.

Ying-Chih Lin, Liang Li, Alena V Makarova, Peter M Burgers, Michael P Stone, R Stephen Lloyd

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Aflatoxin BEnvironmental and molecular mutagenesis · 2025
    Article
  8. Review
  9. Aflatoxin BEnvironmental toxicology and pharmacology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Frequencies and spectra of aflatoxin BNAR molecular medicine · 2024
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Resveratrol Relieved Acute Liver Damage in Ducks (Animals : an open access journal from MDPI · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ying-Chih LinFrom the Cancer Biology Program, Oregon Institute of Occupational Health Sciences, and.
Liang Lithe Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, and.
Alena V Makarovathe Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110.
Peter M Burgersthe Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110.
Michael P Stonethe Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, and.
R Stephen LloydOregon Institute of Occupational Health Sciences, and Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, Oregon 97239, lloydst@ohsu.edu.
Vanderbilt University · USWashington University in St. Louis · USOregon Health & Science University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STACIE B DUSETZINA · 1995 to 2026
$172.8M
Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
ENZYMOLOGY OF REPLICATION OF YEAST CHROMOSOMAL DNAR01GM032431 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 1985 to 2015
$6.5M
DNA Adduct-Induced MutagenesisR01CA055678 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 1992 to 2016
$4.0M
NCI NIH HHS P01 CA160032NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA055678NIEHS NIH HHS P30 ES000267NIEHS NIH HHS P30 ES00267NIGMS NIH HHS GM032431NIGMS NIH HHS R01 GM032431
6 · The paper itself

Abstract

Hepatocellular carcinomas (HCCs) are the third leading cause of cancer deaths worldwide. The highest rates of early onset HCCs occur in geographical regions with high aflatoxin B1 (AFB1) exposure, concomitant with hepatitis B infection. Although the carcinogenic basis of AFB1 has been ascribed to its mutagenic effects, the mutagenic property of the primary AFB1-DNA adduct, AFB1-N7-Gua, in mammalian cells has not been studied extensively. Taking advantage of the ability to create vectors containing a site-specific DNA adduct, the mutagenic potential was determined in primate cells. This adduct was highly mutagenic following replication in COS-7 cells, with a mutation frequency of 45%. The spectrum of mutations was predominantly G to T base substitutions, a result that is consistent with previous mutation data derived from aflatoxin-associated HCCs. To assess which DNA polymerases (pol) might contribute to the mutational outcome, in vitro replication studies were performed. Unexpectedly, replicative pol δ and the error-prone translesion synthesis pol ζ were able to accurately bypass AFB1-N7-Gua. In contrast, replication bypass using pol κ was shown to occur with low fidelity and could account for the commonly detected G to T transversions.

Indexed as

DNA ReplicationAflatoxin B1AnimalsCarcinoma, HepatocellularChlorocebus aethiopsCOS CellsDNA AdductsDNA DamageDNA-Directed DNA PolymeraseDNA RepairHumansLiver NeoplasmsPoint MutationAflatoxin B1aflatoxin B1-DNA adductDNA AdductsDNA-Directed DNA PolymeraseDNA PolymeraseDNA ReplicationEnvironmental CarcinogenesisGenomic InstabilityHepatocellular CarcinomaSite-directed MutagenesisSite-specific DNA AdductTranslesion DNA Synthesis

Identifiers

PMID24838242
PMCPMC4140297
OpenAlexW2011647977

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.