Evidence map›Paper›PMID 24838188›Full record

ArticleProtein science : a publication of the Protein Society2014

Only a subset of the PAB1-mRNP proteome is present in mRNA translation complexes.

Chongxu Zhang, Xin Wang, Shiwha Park, Yueh-chin Chiang, Wen Xi, Thomas M Laue, Clyde L Denis

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Post-transcriptional control of fungal cell wall synthesis.Cell surface (Amsterdam, Netherlands) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Chongxu ZhangDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire, 03824.
Xin Wang
Shiwha Park
Yueh-chin Chiang
Wen Xi
Thomas M Laue
Clyde L Denis
University of New Hampshire · US

Funding

Characterization of the mRNP closed-loop structureR15GM106286 · NIGMS · UNIVERSITY OF NEW HAMPSHIRE · PI DENIS, CLYDE L · 2013 to 2016
$356k
Hypermethylation of the MAL Gene Promoter and its Implications in Breast CancerF31GM082048 · NIGMS · DUKE UNIVERSITY · PI HORNE, HISANI N · 2007 to 2009
$120k
NIGMS NIH HHS GM106286NIGMS NIH HHS GM82048 ANDNIGMS NIH HHS R15 GM106286
6 · The paper itself

Abstract

We have previously identified 55 nonribosomal proteins in PAB1-mRNP complexes in Saccharomyces cerevisiae using mass spectrometric analysis. Because one of the inherent limitations of mass spectrometry is that it does not inform as to the size or type of complexes in which the proteins are present, we consequently used analytical ultracentrifugation with fluorescent detection system (AU-FDS) to determine which proteins are present in the 77S monosomal translation complex that contains minimally the closed-loop structure components (eIF4E, eIF4G, and PAB1), mRNA, and the 40S and 60S ribosomes. We assayed by AU-FDS analysis 33 additional PAB1-mRNP factors but found that only five of these proteins were present in the 77S translation complex: eRF1, SLF1, SSD1, PUB1, and SBP1. eRF1 is involved in translation termination, SBP1 is a translational repressor, and SLF1, SSD1, and PUB1 are known mRNA binding proteins. Many of the known P body/stress granule proteins that associate with the PAB1-mRNP were not present in the 77S translation complex, implying that P body/stress granules result from significant protein additions after translational cessation. These data inform that AU-FDS can clarify protein complex identification that remains undetermined after typical immunoprecipitation and mass spectrometric analyses.

Indexed as

Protein BiosynthesisPoly(A)-Binding ProteinsProteomeRibonucleoproteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinsmessenger ribonucleoproteinpab1 protein, S cerevisiaePoly(A)-Binding ProteinsProteomeRibonucleoproteinsRNA, MessengerSaccharomyces cerevisiae Proteinsanalytical ultracentrifugationPAB1 mRNP complexesprotein synthesistranslation proteome

Identifiers

PMID24838188
PMCPMC4116653
OpenAlexW2129448413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.