Evidence map›Paper›PMID 24837836›Full record

ArticleInternational journal of molecular sciences2014

Molecular recognition of agonist and antagonist for peroxisome proliferator-activated receptor-α studied by molecular dynamics simulations.

Mengyuan Liu, Lushan Wang, Xian Zhao, Xun Sun

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mengyuan LiuState Key Laboratory of Crystal Materials, Shandong University, 27 Shanda Nanlu, Jinan 250100, China. lmyiop@sina.com.
Lushan WangState Key Laboratory of Microbial Technology, Shandong University, 27 Shanda Nanlu, Jinan 250100, China. lswang@sdu.edu.cn.
Xian ZhaoState Key Laboratory of Crystal Materials, Shandong University, 27 Shanda Nanlu, Jinan 250100, China. zhaoxian@icm.sdu.edu.cn.
Xun SunState Key Laboratory of Crystal Materials, Shandong University, 27 Shanda Nanlu, Jinan 250100, China. sunxun@icm.sdu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peroxisome proliferator activated receptor-α (PPAR-α) is a ligand-activated transcription factor which plays important roles in lipid and glucose metabolism. The aim of this work is to find residues which selectively recognize PPAR-α agonists and antagonists. To achieve this aim, PPAR-α/13M and PPAR-α/471 complexes were subjected to perform molecular dynamics simulations. This research suggests that several key residues only participate in agonist recognition, while some other key residues only contribute to antagonist recognition. It is hoped that such work is useful for medicinal chemists to design novel PPAR-α agonists and antagonists.

Indexed as

Molecular Dynamics SimulationBinding SitesCatalytic DomainHumansHydrogen BondingPPAR alphaSmall Molecule LibrariesThermodynamicsPPAR alphaSmall Molecule Libraries

Identifiers

PMID24837836
PMCPMC4057756

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.