Evidence map›Paper›PMID 24837458›Full record

ArticleBioscience reports2014

The carbohydrate-binding domain of overexpressed STBD1 is important for its stability and protein-protein interactions.

Yuanqi Zhu, Mei Zhang, Amber Renee Kelly, Alan Cheng

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Biomedical Implications of Autophagy in Macromolecule Storage Disorders.Frontiers in cell and developmental biology · 2019
    Review
  9. Review
  10. Review
  11. Article
  12. Mouse Stbd1 isJournal of cell science · 2017
    Article
  13. Autophagy in the liver: functions in health and disease.Nature reviews. Gastroenterology & hepatology · 2017
    Review
  14. Article
  15. Structure and function of α-glucan debranching enzymes.Cellular and molecular life sciences : CMLS · 2016
    Review
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yuanqi Zhu*Department of Biochemistry and Molecular Biology, University of Louisville School of Medicine, 319 Abraham Flexner Way, HSC-A 715, Louisville, Kentucky 40202, U.S.A.
Mei Zhang*Department of Biochemistry and Molecular Biology, University of Louisville School of Medicine, 319 Abraham Flexner Way, HSC-A 715, Louisville, Kentucky 40202, U.S.A.
Amber Renee Kelly*Department of Biochemistry and Molecular Biology, University of Louisville School of Medicine, 319 Abraham Flexner Way, HSC-A 715, Louisville, Kentucky 40202, U.S.A.
Alan Cheng*Department of Biochemistry and Molecular Biology, University of Louisville School of Medicine, 319 Abraham Flexner Way, HSC-A 715, Louisville, Kentucky 40202, U.S.A.
University of Louisville · US

Funding

Regulation of Hepatic Carbohydrate Metabolism by STBD1R56DK093847 · NIDDK · UNIVERSITY OF LOUISVILLE · PI CHENG, ALAN · 2012 to 2012
$375k
NIDDK NIH HHS 1R56DK093847
6 · The paper itself

Abstract

STBD1 (starch-binding domain-containing protein 1) belongs to the CBM20 (family 20 carbohydrate binding module) group of proteins, and is implicated in glycogen metabolism and autophagy. However, very little is known about its regulation or interacting partners. Here, we show that the CBM20 of STBD1 is crucial for its stability and ability to interact with glycogen-associated proteins. Mutation of a conserved tryptophan residue (W293) in this domain abolished the ability of STBD1 to bind to the carbohydrate amylose. Compared with the WT (wild-type) protein, this mutant exhibited rapid degradation that was rescued upon inhibition of the proteasome. Furthermore, STBD1 undergoes ubiquitination when expressed in COS cells, and requires the N-terminus for this process. In contrast, inhibition of autophagy did not significantly affect protein stability. In overexpression experiments, we discovered that STBD1 interacts with several glycogen-associated proteins, such as GS (glycogen synthase), GDE (glycogen debranching enzyme) and Laforin. Importantly, the W293 mutant of STBD1 was unable to do so, suggesting an additional role for the CBM20 domain in protein-protein interactions. In HepG2 hepatoma cells, overexpressed STBD1 could associate with endogenous GS. This binding increased during glycogenolysis, suggesting that glycogen is not required to bridge this interaction. Taken together, our results have uncovered new insights into the regulation and binding partners of STBD1.

Indexed as

AnimalsAutophagyCarbohydratesCarcinoma, HepatocellularCell LineCell Line, TumorChlorocebus aethiopsCOS CellsGlycogenGlycogenolysisHEK293 CellsHeLa CellsHep G2 CellsHumansLiver NeoplasmsMembrane ProteinsCarbohydratesGlycogenMembrane ProteinsProteasome Endopeptidase ComplexTryptophan

Identifiers

PMID24837458
PMCPMC4076837
OpenAlexW2014253770

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.