Evidence map›Paper›PMID 24837075›Full record

ReviewRNA (New York, N.Y.)2014

Biosynthesis of wyosine derivatives in tRNA(Phe) of Archaea: role of a remarkable bifunctional tRNA(Phe):m1G/imG2 methyltransferase.

Jaunius Urbonavičius, Rolandas Meškys, Henri Grosjean

Open access · bronzeAbstract readReview
In one paragraph

Review in RNA (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Naturally occurring modified ribonucleosides.Wiley interdisciplinary reviews. RNA · 2020
    Review
  4. Article
  5. Distinct Modified Nucleosides in tRNAJournal of bacteriology · 2019
    Article
  6. Article
  7. Review
  8. Article
  9. Codon-Specific Translation by mFrontiers in genetics · 2018
    Article
  10. Article
  11. Archaeal fibrillarin-Nop5 heterodimer 2'-RNA (New York, N.Y.) · 2017
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Jaunius UrbonavičiusDepartment of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Vilnius University, LT-08662 Vilnius, Lithuania Department of Chemistry and Bioengineering, Vilnius Gediminas Technical University, LT-10223 Vilnius, Lithuania.
Rolandas MeškysDepartment of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Vilnius University, LT-08662 Vilnius, Lithuania.
Henri GrosjeanCentre de Génétique Moléculaire, UPR 3404, CNRS, Associée à l'Université Paris-Sud 11, FRC 3115, 91190 Gif-sur-Yvette, France.
Université Paris-Sud · FRVilnius Gediminas Technical University · LTVilnius University · LT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The presence of tricyclic wyosine derivatives 3'-adjacent to anticodon is a hallmark of tRNA(Phe) in eukaryotes and archaea. In yeast, formation of wybutosine (yW) results from five enzymes acting in a strict sequential order. In archaea, the intermediate compound imG-14 (4-demethylwyosine) is a target of three different enzymes, leading to the formation of distinct wyosine derivatives (yW-86, imG, and imG2). We focus here on a peculiar methyltransferase (aTrm5a) that catalyzes two distinct reactions: N(1)-methylation of guanosine and C(7)-methylation of imG-14, whose function is to allow the production of isowyosine (imG2), an intermediate of the 7-methylwyosine (mimG) biosynthetic pathway. Based on the formation of mesomeric forms of imG-14, a rationale for such dual enzymatic activities is proposed. This bifunctional tRNA:m(1)G/imG2 methyltransferase, acting on two chemically distinct guanosine derivatives located at the same position of tRNA(Phe), is unique to certain archaea and has no homologs in eukaryotes. This enzyme here referred to as Taw22, probably played an important role in the emergence of the multistep biosynthetic pathway of wyosine derivatives in archaea and eukaryotes.

Indexed as

AnticodonArchaeaBiosynthetic PathwaysGuanosineNucleosidesRNA, Transfer, PhetRNA MethyltransferasesAnticodonGuanosineNucleosidesRNA, Transfer, PhetRNA MethyltransferaseswybutosinewyosinearchaeaCOG2520methyltransferasemodificationtransfer RNA

Identifiers

PMID24837075
PMCPMC4024628
OpenAlexW1982094005

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.