Evidence map›Paper›PMID 24836425›Full record

ArticleNature immunology2014

TCF-1 and LEF-1 act upstream of Th-POK to promote the CD4(+) T cell fate and interact with Runx3 to silence Cd4 in CD8(+) T cells.

Farrah C Steinke, Shuyang Yu, Xinyuan Zhou, Bing He, Wenjing Yang, Bo Zhou, Hiroshi Kawamoto, Jun Zhu, Kai Tan, Hai-Hui Xue

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 187 citations in OpenAlex.

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  6. metileneNature communications · 2026
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  11. Wnt signaling - using the bloodstream to send a message.Cellular and molecular life sciences : CMLS · 2025
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  17. Refining Diagnostic Subtypes of Peripheral T-Cell Lymphoma Using a Multiparameter Approach.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2025
    Article
  18. Article
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  20. Article

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Farrah C Steinke *Department of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, IA 52242.
Shuyang Yu *State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, P. R. China 100193.
Xinyuan ZhouInsitute of Immunology, Third Military Medical University, Chongqing, P. R. China 400038.
Bing HeInterdisciplinary Graduate Program in Genetics, Carver College of Medicine, University of Iowa, Iowa City, IA 52242.
Wenjing YangDevelopment Biology Center, NHLBI, NIH, Bethesda, MD 20892.
Bo ZhouDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, IA 52242.
Hiroshi KawamotoDepartment of Immunology, Institute for Frontier Medical Sciences, Kyoto University, Kyoto, Japan 606-8507.
Jun ZhuDevelopment Biology Center, NHLBI, NIH, Bethesda, MD 20892.
Kai TanDepartment of Internal Medicine, Carver College of Medicine, University of Iowa, Iowa City, IA 52242.
Hai-Hui XueDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, IA 52242.
University of Iowa · USNational Institutes of Health · USArmy Medical University · CNChina Agricultural University · CNKyoto University · JP

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Brandi Janssen · 1990 to 2026
$40.5M
DNA Sequencing Core (DSC)ZICHL006058 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHU, JUN · 2010 to 2016
$16.6M
PREDOCTORAL TRAINING PROGRAM IN IMMUNOLOGYT32AI007485 · NIAID · UNIVERSITY OF IOWA · PI Kevin L Legge · 1995 to 2026
$5.4M
Critical roles of GA binding protein in HSC maintenance and ageingR01HL095540 · NHLBI · UNIVERSITY OF IOWA · PI XUE, HAI-HUI · 2009 to 2013
$1.8M
EPIGENETIC REGULATION OF STEM CELL FATE CHOICER01HG006130 · NHGRI · UNIVERSITY OF IOWA · PI TAN, KAI · 2012 to 2016
$1.7M
A TOOLKIT FOR IDENTIFYING CAUSAL VARIANTS IN TRANSCRIPTIONAL ENHANCERSR01GM104369 · NIGMS · UNIVERSITY OF IOWA · PI TAN, KAI · 2014 to 2017
$1.2M
Flow Cytometry Cell SorterS10RR027219 · NCRR · UNIVERSITY OF IOWA · PI BALLAS, ZUHAIR K. · 2009 to 2009
$500k
Decoding TCF1-controlled transcriptional program that promotes memory T cell fateR21AI105351 · NIAID · UNIVERSITY OF IOWA · PI XUE, HAI-HUI · 2013 to 2014
$378k
NCI NIH HHS P30CA086862NCRR NIH HHS 1S10 RR027219NHGRI NIH HHS HG006130NHGRI NIH HHS R01 HG006130NHLBI NIH HHS HL095540NHLBI NIH HHS R01 HL095540NIAID NIH HHS AI007485NIAID NIH HHS AI105351NIAID NIH HHS R21 AI105351NIAID NIH HHS T32 AI007485NIEHS NIH HHS P30 ES005605NIGMS NIH HHS R01 GM104369
6 · The paper itself

Abstract

The transcription factors TCF-1 and LEF-1 are essential for early T cell development, but their roles beyond the CD4(+)CD8(+) double-positive (DP) stage are unknown. By specific ablation of these factors in DP thymocytes, we demonstrated that deficiency in TCF-1 and LEF-1 diminished the output of CD4(+) T cells and redirected CD4(+) T cells to a CD8(+) T cell fate. The role of TCF-1 and LEF-1 in the CD4-versus-CD8 lineage 'choice' was mediated in part by direct positive regulation of the transcription factor Th-POK. Furthermore, loss of TCF-1 and LEF-1 unexpectedly caused derepression of CD4 expression in T cells committed to the CD8(+) lineage without affecting the expression of Runx transcription factors. Instead, TCF-1 physically interacted with Runx3 to cooperatively silence Cd4. Thus, TCF-1 and LEF-1 adopted distinct genetic 'wiring' to promote the CD4(+) T cell fate and establish CD8(+) T cell identity.

Indexed as

AnimalsCD4 AntigensCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell LineageCore Binding Factor Alpha 3 SubunitFemaleHepatocyte Nuclear Factor 1-alphaLymphoid Enhancer-Binding Factor 1MaleMiceT Cell Transcription Factor 1Transcription FactorsCD4 AntigensCore Binding Factor Alpha 3 SubunitHepatocyte Nuclear Factor 1-alphaHnf1a protein, mouseLef1 protein, mouseLymphoid Enhancer-Binding Factor 1Runx3 protein, mouseT Cell Transcription Factor 1Transcription FactorsZbtb7b protein, mouse

Identifiers

PMID24836425
PMCPMC4064003
OpenAlexW1985481350

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.