Evidence map›Paper›PMID 24835677›Full record

ArticleAnesthesiology2014

Characterization of a computationally designed water-soluble human μ-opioid receptor variant using available structural information.

Xuelian Zhao, Jose Manuel Perez-Aguilar, Felipe Matsunaga, Mitchell Lerner, Jin Xi, Bernard Selling, A T Charlie Johnson, Jeffery G Saven, Renyu Liu

Open access · bronzeAbstract read
In one paragraph

Article in Anesthesiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. MoS2d materials · 2020
    Article
  6. QTY code enables design of detergent-free chemokine receptors that retain ligand-binding activities.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Membrane proteins: always an insoluble problem?Biochemical Society transactions · 2016
    Review
  11. Computational redesign of the lipid-facing surface of the outer membrane protein OmpA.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xuelian ZhaoFrom the Department of Anesthesiology and Critical Care (X.Z., F.M., J.X., R.L.), Department of Chemistry (J.M.P.-A., J.G.S.), and Department of Physics and Astronomy (M.L., A.T.C.J.), University of Pennsylvania, Philadelphia, Pennsylvania; and Impact Biologicals Inc., Wallingford, Pennsylvania (B.S.). Current addresses: Department of Anesthesiology, the Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei, China (X.Z.); and Department of Physiology and Biophysics, Weill Cornell Medical College, New York, New York (J.M.P.-A.).
Jose Manuel Perez-Aguilar
Felipe Matsunaga
Mitchell Lerner
Jin Xi
Bernard Selling
A T Charlie Johnson
Jeffery G Saven
Renyu Liu
University of Pennsylvania · US

Funding

Water soluble variants of the human mu opioid receptorR01GM111421 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LIU, RENYU · 2014 to 2018
$1.7M
Structural Approaches for Understanding Opioid and ??-Receptor InteractionsK08GM093115 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LIU, RENYU · 2010 to 2013
$505k
NIGMS NIH HHS K08 GM093115NIGMS NIH HHS K08-GM-093115NIGMS NIH HHS R01 GM111421
6 · The paper itself

Abstract

backgroundThe recent X-ray crystal structure of the murine μ-opioid receptor (MUR) allowed the authors to reengineer a previously designed water-soluble variant of the transmembrane portion of the human MUR (wsMUR-TM).

methodsThe new variant of water-soluble MUR (wsMUR-TM_v2) was engineered based on the murine MUR crystal structure. This novel variant was expressed in Escherichia coli and purified. The properties of the receptor were characterized and compared with those of wsMUR-TM.

resultsSeven residues originally included for mutation in the design of the wsMUR-TM were reverted to their native identities. wsMUR-TM_v2 contains 16% mutations of the total sequence. It was overexpressed and purified with high yield. Although dimers and higher oligomers were observed to form over time, the wsMUR-TM_v2 stayed predominantly monomeric at concentrations as high as 7.5 mg/ml in buffer within a 2-month period. Its secondary structure was predominantly helical and comparable with those of both the original wsMUR-TM variant and the native MUR. The binding affinity of wsMUR-TM_v2 for naltrexone (K(d) approximately 70 nM) was in close agreement with that for wsMUR-TM. The helical content of wsMUR-TM_v2 decreased cooperatively with increasing temperature, and the introduction of sucrose was able to stabilize the protein.

conclusionsA novel functional wsMUR-TM_v2 with only 16% mutations was successfully engineered, expressed in E. coli, and purified based on information from the crystal structure of murine MUR. This not only provides a novel alternative tool for MUR studies in solution conditions but also offers valuable information for protein engineering and structure-function relations.

Indexed as

Amino Acid SequenceAnimalsBinding SitesComputational BiologyCrystallography, X-RayGenetic VariationHEK293 CellsHumansMiceMolecular Sequence DataNaltrexoneProtein EngineeringProtein Structure, SecondaryProtein Structure, TertiaryReceptors, Opioid, muSolubilityNaltrexoneReceptors, Opioid, muWater

Identifiers

PMID24835677
PMCPMC4175066
OpenAlexW2022238902

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.