Evidence map›Paper›PMID 24834072›Full record

ArticleFrontiers in genetics2014

Modelization of the regulation of protein synthesis following fertilization in sea urchin shows requirement of two processes: a destabilization of eIF4E:4E-BP complex and a great stimulation of the 4E-BP-degradation mechanism, both rapamycin-sensitive.

Sébastien Laurent, Adrien Richard, Odile Mulner-Lorillon, Julia Morales, Didier Flament, Virginie Glippa, Jérémie Bourdon, Pauline Gosselin, Anne Siegel, Patrick Cormier and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Biology · 2022
    Article
  3. Article
  4. Article
  5. Marine systems biology.Frontiers in genetics · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Sébastien LaurentIfremer, UMR6197, Laboratoire de Microbiologie des Environnements Extrêmes Plouzané, France.
Adrien RichardUniversité de Nice-Sophia Antipolis, UMR 7271, Laboratoire I3S Sophia, Antipolis, France.
Odile Mulner-LorillonSorbonne Universités, UPMC University Paris 06, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France ; CNRS, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France.
Julia MoralesSorbonne Universités, UPMC University Paris 06, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France ; CNRS, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France.
Didier FlamentIfremer, UMR6197, Laboratoire de Microbiologie des Environnements Extrêmes Plouzané, France.
Virginie GlippaSorbonne Universités, UPMC University Paris 06, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France ; CNRS, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France.
Jérémie BourdonCNRS UMR 6241, Laboratoire LINA, Université de Nantes Nantes, France.
Pauline GosselinSorbonne Universités, UPMC University Paris 06, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France ; CNRS, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France.
Anne SiegelCNRS, IRISA-UMR 6074, Campus de Beaulieu Rennes, France ; INRIA, Centre Rennes - Bretagne Atlantique, Symbiose, Campus de Beaulieu Rennes, France.
Patrick CormierSorbonne Universités, UPMC University Paris 06, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France ; CNRS, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France.
Robert BelléSorbonne Universités, UPMC University Paris 06, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France ; CNRS, UMR 8227, Integrative Biology of Marine Models, Translation Cell Cycle and Development Station Biologique de Roscoff, Roscoff cedex, France.
Centre National de la Recherche Scientifique · FRIfremer · FRUniversité Côte d'Azur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fertilization of sea urchin eggs involves an increase in protein synthesis associated with a decrease in the amount of the translation initiation inhibitor 4E-BP. A highly simple reaction model for the regulation of protein synthesis was built and was used to simulate the physiological changes in the total 4E-BP amount observed during time after fertilization. Our study evidenced that two changes occurring at fertilization are necessary to fit with experimental data. The first change was an 8-fold increase in the dissociation parameter (koff1) of the eIF4E:4E-BP complex. The second was an important 32.5-fold activation of the degradation mechanism of the protein 4E-BP. Additionally, the changes in both processes should occur in 5 min time interval post-fertilization. To validate the model, we checked that the kinetic of the predicted 4.2-fold increase of eIF4E:eIF4G complex concentration at fertilization matched the increase of protein synthesis experimentally observed after fertilization (6.6-fold, SD = 2.3, n = 8). The minimal model was also used to simulate changes observed after fertilization in the presence of rapamycin, a FRAP/mTOR inhibitor. The model showed that the eIF4E:4E-BP complex destabilization was impacted and surprisingly, that the mechanism of 4E-BP degradation was also strongly affected, therefore suggesting that both processes are controlled by the protein kinase FRAP/mTOR.

Indexed as

deterministic modelmechanisms of fertilizationsea urchin embryostranslational controltranslation simulation

Identifiers

PMID24834072
PMCPMC4018528
OpenAlexW2095943660

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.