Evidence map›Paper›PMID 24834068›Full record

ReviewFrontiers in plant science2014

Mechanisms and regulation of surface interactions and biofilm formation in Agrobacterium.

Jason E Heindl, Yi Wang, Brynn C Heckel, Bitan Mohari, Nathan Feirer, Clay Fuqua

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 128 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Functional analysis of cyclic diguanylate-modulating proteins inbioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Control of biofilm formation by anProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Control of Biofilm Formation by anbioRxiv : the preprint server for biology · 2023
    Article
  18. Transcription Factor PecS MediatesJournal of bacteriology · 2023
    Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jason E HeindlDepartment of Biology, Indiana University, Bloomington IN, USA.
Yi WangDepartment of Biology, Indiana University, Bloomington IN, USA.
Brynn C HeckelDepartment of Biology, Indiana University, Bloomington IN, USA.
Bitan MohariDepartment of Biology, Indiana University, Bloomington IN, USA.
Nathan FeirerDepartment of Biology, Indiana University, Bloomington IN, USA.
Clay FuquaDepartment of Biology, Indiana University, Bloomington IN, USA.
Indiana University Bloomington · US

Funding

Synthesis and function of a unipolar expolysaccharide in AgrobacteriumR01GM080546 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI FUQUA, WILLIAM C · 2007 to 2011
$1.3M
Developmental Asymmetry in Agrobacterium tumefaciensF32GM100601 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI HEINDL, JASON EUGENE · 2012 to 2014
$135k
NIGMS NIH HHS F32 GM100601NIGMS NIH HHS R01 GM080546
6 · The paper itself

Abstract

For many pathogenic bacteria surface attachment is a required first step during host interactions. Attachment can proceed to invasion of host tissue or cells or to establishment of a multicellular bacterial community known as a biofilm. The transition from a unicellular, often motile, state to a sessile, multicellular, biofilm-associated state is one of the most important developmental decisions for bacteria. Agrobacterium tumefaciens genetically transforms plant cells by transfer and integration of a segment of plasmid-encoded transferred DNA (T-DNA) into the host genome, and has also been a valuable tool for plant geneticists. A. tumefaciens attaches to and forms a complex biofilm on a variety of biotic and abiotic substrates in vitro. Although rarely studied in situ, it is hypothesized that the biofilm state plays an important functional role in the ecology of this organism. Surface attachment, motility, and cell division are coordinated through a complex regulatory network that imparts an unexpected asymmetry to the A. tumefaciens life cycle. In this review, we describe the mechanisms by which A. tumefaciens associates with surfaces, and regulation of this process. We focus on the transition between flagellar-based motility and surface attachment, and on the composition, production, and secretion of multiple extracellular components that contribute to the biofilm matrix. Biofilm formation by A. tumefaciens is linked with virulence both mechanistically and through shared regulatory molecules. We detail our current understanding of these and other regulatory schemes, as well as the internal and external (environmental) cues mediating development of the biofilm state, including the second messenger cyclic-di-GMP, nutrient levels, and the role of the plant host in influencing attachment and biofilm formation. A. tumefaciens is an important model system contributing to our understanding of developmental transitions, bacterial cell biology, and biofilm formation.

Indexed as

Agrobacteriumattachmentbiofilmcyclic-di-GMPmotilitypolarity

Identifiers

PMID24834068
PMCPMC4018554
OpenAlexW2097967843

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.