Evidence map›Paper›PMID 24833716›Full record

ArticleHuman molecular genetics2014

Haplotype-specific modulation of a SOX10/CREB response element at the Charcot-Marie-Tooth disease type 4C locus SH3TC2.

Megan Hwa Brewer, Ki Hwan Ma, Gary W Beecham, Chetna Gopinath, Frank Baas, Byung-Ok Choi, Mary M Reilly, Michael E Shy, Stephan Züchner, John Svaren and 1 more

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Association between Synonymous SNPs ofAnimals : an open access journal from MDPI · 2022
    Article
  2. Article
  3. Mechanisms and Treatments in Demyelinating CMT.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Review
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 4 countries.

Megan Hwa BrewerDepartment of Human Genetics.
Ki Hwan MaCellular and Molecular Pathology (CMP) Program.
Gary W BeechamDr John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA.
Chetna GopinathCellular and Molecular Biology Program, University of Michigan Medical School, Ann Arbor, MI, USA.
Frank BaasDepartment of Genome Analysis, Academic Medical Centre, Amsterdam, The Netherlands.
Byung-Ok ChoiDepartment of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Gangnam-Gu, Seoul, Korea.
Mary M ReillyMRC Centre for Neuromuscular Diseases, UCL Institute of Neurology, Queen Square, London, UK.
Michael E ShyDepartment of Neurology Department of Pediatrics and Department of Physiology, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Stephan ZüchnerDr John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA.
John SvarenWaisman Center and Department of Comparative Biosciences, University of Wisconsin-Madison, Madison, WI, USA.
Anthony AntonellisDepartment of Human Genetics Department of Neurology and Cellular and Molecular Biology Program, University of Michigan Medical School, Ann Arbor, MI, USA antonell@umich.edu.
Dr. John T. Macdonald Foundation · USUniversity of Iowa · USUniversity of Michigan–Ann Arbor · USAcademic Medical Center · NLNational Hospital for Neurology and Neurosurgery · GBSungkyunkwan University · KRUniversity of Wisconsin–Madison · US

Funding

WISCONSIN CENTER ON MENTAL RETARDATION: CORE SUPPORTP30HD003352 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI DAVIDSON, RICHARD J · 1985 to 2015
$25.2M
trainingU54NS065712 · NINDS · WAYNE STATE UNIVERSITY · PI SHY, MICHAEL E. · 2009 to 2023
$19.6M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
Epigenetic Regulation of Peripheral Nerve MyelinationR01NS075269 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI SVAREN, JOHN P · 2011 to 2015
$1.5M
Dissection of genetic pathways critical for myelinating Schwann cell developmentR01NS073748 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ANTONELLIS, ANTHONY · 2011 to 2015
$1.5M
NICHD NIH HHS P30 HD003352NIGMS NIH HHS T32 GM007315NINDS NIH HHS NS073748NINDS NIH HHS NS075269NINDS NIH HHS R01 NS073748NINDS NIH HHS R01 NS075269NINDS NIH HHS U54 NS065712NINDS NIH HHS U54NS065712
6 · The paper itself

Abstract

Loss-of-function mutations in the Src homology 3 (SH3) domain and tetratricopeptide repeats 2 (SH3TC2) gene cause autosomal recessive demyelinating Charcot-Marie-Tooth neuropathy. The SH3TC2 protein has been implicated in promyelination signaling through axonal neuregulin-1 and the ERBB2 Schwann cell receptor. However, little is known about the transcriptional regulation of the SH3TC2 gene. We performed computational and functional analyses that revealed two cis-acting regulatory elements at SH3TC2-one at the promoter and one ∼150 kb downstream of the transcription start site. Both elements direct reporter gene expression in Schwann cells and are responsive to the transcription factor SOX10, which is essential for peripheral nervous system myelination. The downstream enhancer harbors a single-nucleotide polymorphism (SNP) that causes an ∼80% reduction in enhancer activity. The SNP resides directly within a predicted binding site for the transcription factor cAMP response element binding protein (CREB), and we demonstrate that this regulatory element binds to CREB and is activated by CREB expression. Finally, forskolin induces Sh3tc2 expression in rat primary Schwann cells, indicating that SH3TC2 is a CREB target gene. These findings prompted us to determine if SNP genotypes at SH3TC2 are associated with differential phenotypes in the most common demyelinating peripheral neuropathy, CMT1A. Interestingly, this revealed several associations between SNP alleles and disease severity. In summary, our data indicate that SH3TC2 is regulated by the transcription factors CREB and SOX10, define a regulatory SNP at this disease-associated locus and reveal SH3TC2 as a candidate modifier locus of CMT disease phenotypes.

Indexed as

HaplotypesResponse ElementsAllelesAnimalsBase SequenceBinding SitesCharcot-Marie-Tooth DiseaseColforsinComputational BiologyConserved SequenceCyclic AMP Response Element-Binding ProteinDatabases, GeneticGene ExpressionGene Expression RegulationGenes, ReporterGenetic LociColforsinCyclic AMP Response Element-Binding ProteinIntracellular Signaling Peptides and ProteinsProteinsSH3TC2 protein, humanSOXE Transcription FactorsTranscription Factors

Identifiers

PMID24833716
PMCPMC4168306
OpenAlexW2134722584

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.