Evidence map›Paper›PMID 24832541›Full record

ArticlePLoS genetics2014

Intron retention in the 5'UTR of the novel ZIF2 transporter enhances translation to promote zinc tolerance in arabidopsis.

Estelle Remy, Tânia R Cabrito, Rita A Batista, Mohamed A M Hussein, Miguel C Teixeira, Alekos Athanasiadis, Isabel Sá-Correia, Paula Duque

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
19.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
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  6. Article
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  8. Article
  9. Genome-Wide Association Analysis for Hybrid Breeding in Wheat.International journal of molecular sciences · 2022
    Article
  10. OsTBP2.1, a TATA-Binding Protein, Alters the Ratio ofInternational journal of molecular sciences · 2022
    Article
  11. Review
  12. Review
  13. Review
  14. Phosphorus Starvation- and Zinc Excess-InducedJournal of fungi (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Estelle RemyInstituto Gulbenkian de Ciência, Oeiras, Portugal.
Tânia R CabritoInstitute for Biotechnology and BioEngineering (IBB), Centre for Biological and Chemical Engineering, Department of Bioengineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal.
Rita A BatistaInstituto Gulbenkian de Ciência, Oeiras, Portugal.
Mohamed A M HusseinInstitute for Biotechnology and BioEngineering (IBB), Centre for Biological and Chemical Engineering, Department of Bioengineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal.
Miguel C TeixeiraInstitute for Biotechnology and BioEngineering (IBB), Centre for Biological and Chemical Engineering, Department of Bioengineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal.
Alekos AthanasiadisInstituto Gulbenkian de Ciência, Oeiras, Portugal.
Isabel Sá-CorreiaInstitute for Biotechnology and BioEngineering (IBB), Centre for Biological and Chemical Engineering, Department of Bioengineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal.
Paula DuqueInstituto Gulbenkian de Ciência, Oeiras, Portugal.
Instituto Gulbenkian de Ciência · PTUniversity of Lisbon · PTInstitute for Biotechnology and Bioengineering · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root vacuolar sequestration is one of the best-conserved plant strategies to cope with heavy metal toxicity. Here we report that zinc (Zn) tolerance in Arabidopsis requires the action of a novel Major Facilitator Superfamily (MFS) transporter. We show that ZIF2 (Zinc-Induced Facilitator 2) localises primarily at the tonoplast of root cortical cells and is a functional transporter able to mediate Zn efflux when heterologously expressed in yeast. By affecting plant tissue partitioning of the metal ion, loss of ZIF2 function exacerbates plant sensitivity to excess Zn, while its overexpression enhances Zn tolerance. The ZIF2 gene is Zn-induced and an intron retention event in its 5'UTR generates two splice variants (ZIF2.1 and ZIF2.2) encoding the same protein. Importantly, high Zn favours production of the longer ZIF2.2 transcript, which compared to ZIF2.1 confers greater Zn tolerance to transgenic plants by promoting higher root Zn immobilization. We show that the retained intron in the ZIF2 5'UTR enhances translation in a Zn-responsive manner, markedly promoting ZIF2 protein expression under excess Zn. Moreover, Zn regulation of translation driven by the ZIF2.2 5'UTR depends largely on a predicted stable stem loop immediately upstream of the start codon that is lost in the ZIF2.1 5'UTR. Collectively, our findings indicate that alternative splicing controls the levels of a Zn-responsive mRNA variant of the ZIF2 transporter to enhance plant tolerance to the metal ion.

Indexed as

Heavy Metal Poisoning5' Untranslated RegionsArabidopsisGene Expression Regulation, PlantHomeostasisIntronsPlant RootsPlants, Genetically ModifiedPoisoningRNA, MessengerVacuolesZinc5' Untranslated RegionsRNA, MessengerZinc

Identifiers

PMID24832541
PMCPMC4022490
OpenAlexW2069080470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.