Evidence map›Paper›PMID 24832089›Full record

ArticlePloS one2014

Substitutional analysis of the C-terminal domain of AbrB revealed its essential role in DNA-binding activity.

Svetlana Neubauer, Olga Dolgova, Gregory Präg, Rainer Borriss, Oliwia Makarewicz

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Svetlana NeubauerInstitute of Biology, Humboldt University of Berlin, Berlin, Germany.
Olga DolgovaInstitute of Biology, Humboldt University of Berlin, Berlin, Germany.
Gregory PrägInstitute of Biology, Humboldt University of Berlin, Berlin, Germany.
Rainer BorrissInstitute of Biology, Humboldt University of Berlin, Berlin, Germany.
Oliwia MakarewiczInstitute of Biology, Humboldt University of Berlin, Berlin, Germany; Center for Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.
Humboldt-Universität zu Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The global transition state regulator AbrB controls more than 100 genes of the Bacillus relatives and is known to interact with varying DNA-sequences. The DNA-binding domain of the AbrB-like proteins was proposed to be located exclusively within the amino-terminal ends. However, the recognition of DNA, and specificity of the binding mechanism, remains elusive still in view of highly differing recognition sites. Here we present a substitutional analysis to examine the role of the carboxy-terminal domain of AbrB from Bacillus subtilis and Bacillus amyloliquefaciens. Our results demonstrate that the carboxy-terminal domains of AbrB affect the DNA-binding properties of the tetrameric AbrB. Most likely, the C-termini are responsible for the cooperative character observed for AbrB interaction with some DNA targets like tycA and phyC.

Indexed as

Amino Acid SequenceBacillusBacillus subtilisBacterial ProteinsDNADNA-Binding ProteinsMolecular Sequence DataMutagenesis, Site-DirectedOligonucleotidesPeptide SynthasesPromoter Regions, GeneticProtein BindingProtein Structure, TertiarySequence Homology, Amino AcidTranscription FactorsAbrB protein, Bacillus subtilisBacterial ProteinsDNADNA-Binding ProteinsOligonucleotidesPeptide SynthasesTranscription Factorstyrocidine synthetase

Identifiers

PMID24832089
PMCPMC4022651
OpenAlexW2050181876

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.