Evidence map›Paper›PMID 24831008›Full record

ArticleThe Journal of biological chemistry2014

The double zinc finger domain and adjacent accessory domain from the transcription factor loss of zinc sensing 1 (loz1) are necessary for DNA binding and zinc sensing.

Kate M Ehrensberger, Mark E Corkins, Sangyong Choi, Amanda J Bird

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Conformational dynamics in specialized CProtein science : a publication of the Protein Society · 2025
    Article
  2. Zinc homeostasis in Schizosaccharomyces pombe.Archives of microbiology · 2023
    Review
  3. Transcription factors and transporters in zinc homeostasis: lessons learned from fungi.Critical reviews in biochemistry and molecular biology · 2020
    Review
  4. Article
  5. Zinc-dependent activation of the Pho8 alkaline phosphatase inThe Journal of biological chemistry · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Zinc sensing and regulation in yeast model systems.Archives of biochemistry and biophysics · 2016
    Review
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Kate M EhrensbergerFrom the Department of Molecular Genetics, the Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210.
Mark E CorkinsFrom the Department of Molecular Genetics.
Sangyong Choithe Department of Human Sciences, and.
Amanda J BirdFrom the Department of Molecular Genetics, the Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210the Department of Human Sciences, and bird.96@osu.edu.
The Ohio State University · USLaboratory of Molecular Genetics · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Loz1 transcription factor from Schizosaccharomyces pombe plays an essential role in zinc homeostasis by repressing target gene expression in zinc-replete cells. To determine how Loz1 function is regulated by zinc, we employed a genetic screen to isolate mutants with impaired zinc-dependent gene expression and analyzed Loz1 protein truncations to map a minimal zinc-responsive domain. In the screen, we isolated 36 new loz1 alleles. 27 of these alleles contained mutations resulting in the truncation of the Loz1 protein. The remaining nine alleles contained point mutations leading to an amino acid substitution within a C-terminal double zinc finger domain. Further analysis of two of these substitutions revealed that they disrupted Loz1 DNA activity in vitro. By analyzing Loz1 protein truncations, we found that the last 96 amino acids of Loz1 was the smallest region that was able to confer partial zinc-dependent repression in vivo. This 96-amino acid region contains the double zinc finger domain and an accessory domain that enhances DNA binding. These results were further supported by the findings that MtfA, a transcription factor from Aspergillus nidulans that contains a related double zinc finger, is unable to complement loz1Δ, whereas a chimera of MtfA containing the Loz1 accessory domain is able to complement loz1Δ. Together, our studies indicate that the double zinc finger domain and adjacent accessory domain preceding zinc finger 1 are necessary for DNA binding and zinc-dependent repression.

Indexed as

Amino Acid SequenceBase SequenceDNA, FungalDown-RegulationGene Expression Regulation, FungalMolecular Sequence DataProtein Structure, TertiarySchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription FactorsZincZinc FingersDNA, FungalLoz1 protein, S pombeSchizosaccharomyces pombe ProteinsTranscription FactorsZincMetal HomeostasisMetallosensorTranscription RepressorYeast GeneticsZincZinc Finger

Identifiers

PMID24831008
PMCPMC4140304
OpenAlexW2085885318

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.