Evidence map›Paper›PMID 24830919›Full record

ArticleJournal of neurogenetics2015

Detection of copy number variation by SNP-allelotyping.

Brett Parker, Ryan Alexander, Xingyao Wu, Shawna Feely, Michael Shy, Nathalie Schnetz-Boutaud, Jun Li

Abstract read
In one paragraph

Article in Journal of neurogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Brett ParkerDepartment of Neurology, Vanderbilt University School of Medicine , Nashville, TN , USA.
Ryan Alexander
Xingyao Wu
Shawna Feely
Michael Shy
Nathalie Schnetz-Boutaud
Jun Li
Vanderbilt University · USUniversity of Iowa · US

Funding

The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
trainingU54NS065712 · NINDS · WAYNE STATE UNIVERSITY · PI SHY, MICHAEL E. · 2009 to 2023
$19.6M
Pathophysiology of Conduction Block in HNPP.R01NS066927 · NINDS · WAYNE STATE UNIVERSITY · PI LI, JUN · 2010 to 2019
$3.5M
SVIP and CMT1AR21NS081364 · NINDS · VANDERBILT UNIVERSITY · PI LI, JUN · 2012 to 2013
$348k
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1TR000445NINDS NIH HHS 5U54NS065712NINDS NIH HHS NS066927NINDS NIH HHS NS081364NINDS NIH HHS R01 NS066927NINDS NIH HHS R21 NS081364NINDS NIH HHS U54 NS065712
6 · The paper itself

Abstract

Charcot-Marie-Tooth disease type 1A (CMT1A) is caused by an abnormal copy number variation (CNV) with a trisomy of chromosome 17p12. The increase of the DNA-segment copy number is expected to alter the allele frequency of single nucleotide polymorphism (SNP) within the duplicated region. We tested whether SNP allele frequency determined by a Sequenom MassArray can be used to detect the CMT1A mutation. Our results revealed distinct patterns of SNP allele frequency distribution, which reliably differentiated CMT1A patients from controls. This finding suggests that this technique may serve as an alternative approach to identifying CNV in certain diseases, including CMT1A.

Indexed as

Amyotrophic Lateral SclerosisCharcot-Marie-Tooth DiseaseChromosomes, Human, Pair 17DNA Copy Number VariationsFemaleGene FrequencyGenotypeHumansMalePolymorphism, Single NucleotideProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationCDRT1 protein, humanProteinsCharcot-Marie-Tooth disease type-1Acopy number variationperipheral myelin protein-22single nucleotide polymorphism

Identifiers

PMID24830919
PMCPMC4254366
OpenAlexW2031250658

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.