Evidence map›Paper›PMID 24830408›Full record

ArticlePloS one2014

The C-terminal domain from S. cerevisiae Pat1 displays two conserved regions involved in decapping factor recruitment.

Zaineb Fourati, Olga Kolesnikova, Régis Back, Jenny Keller, Clément Charenton, Valerio Taverniti, Claudine Gaudon Plesse, Noureddine Lazar, Dominique Durand, Herman van Tilbeurgh and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.1field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review
  4. Article
  5. Article
  6. Pat1 activates late steps in mRNA decay by multiple mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Article
  9. mRNA decapping: finding the right structures.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  10. A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Zaineb FouratiLaboratoire de Biochimie, Centre National de Recherche Scientifique (CNRS) UMR 7654, Ecole Polytechnique, Palaiseau Cedex, France; Institut de Biochimie et Biophysique Moléculaire et Cellulaire (IBBMC), Centre National de Recherche Scientifique (CNRS) UMR 8619, Bat. 430, Université Paris Sud, Orsay Cedex, France.
Olga KolesnikovaEquipe Labellisée La Ligue, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Centre National de Recherche Scientifique (CNRS) UMR 7104/Institut National de Santé et de Recherche Médicale (INSERM) U964/Université de Strasbourg, Illkirch, France.
Régis BackLaboratoire de Biochimie, Centre National de Recherche Scientifique (CNRS) UMR 7654, Ecole Polytechnique, Palaiseau Cedex, France.
Jenny KellerInstitut de Biochimie et Biophysique Moléculaire et Cellulaire (IBBMC), Centre National de Recherche Scientifique (CNRS) UMR 8619, Bat. 430, Université Paris Sud, Orsay Cedex, France.
Clément CharentonLaboratoire de Biochimie, Centre National de Recherche Scientifique (CNRS) UMR 7654, Ecole Polytechnique, Palaiseau Cedex, France.
Valerio TavernitiEquipe Labellisée La Ligue, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Centre National de Recherche Scientifique (CNRS) UMR 7104/Institut National de Santé et de Recherche Médicale (INSERM) U964/Université de Strasbourg, Illkirch, France.
Claudine Gaudon PlesseEquipe Labellisée La Ligue, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Centre National de Recherche Scientifique (CNRS) UMR 7104/Institut National de Santé et de Recherche Médicale (INSERM) U964/Université de Strasbourg, Illkirch, France.
Noureddine LazarInstitut de Biochimie et Biophysique Moléculaire et Cellulaire (IBBMC), Centre National de Recherche Scientifique (CNRS) UMR 8619, Bat. 430, Université Paris Sud, Orsay Cedex, France.
Dominique DurandInstitut de Biochimie et Biophysique Moléculaire et Cellulaire (IBBMC), Centre National de Recherche Scientifique (CNRS) UMR 8619, Bat. 430, Université Paris Sud, Orsay Cedex, France.
Herman van TilbeurghInstitut de Biochimie et Biophysique Moléculaire et Cellulaire (IBBMC), Centre National de Recherche Scientifique (CNRS) UMR 8619, Bat. 430, Université Paris Sud, Orsay Cedex, France.
Bertrand SéraphinEquipe Labellisée La Ligue, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Centre National de Recherche Scientifique (CNRS) UMR 7104/Institut National de Santé et de Recherche Médicale (INSERM) U964/Université de Strasbourg, Illkirch, France.
Marc GrailleLaboratoire de Biochimie, Centre National de Recherche Scientifique (CNRS) UMR 7654, Ecole Polytechnique, Palaiseau Cedex, France; Institut de Biochimie et Biophysique Moléculaire et Cellulaire (IBBMC), Centre National de Recherche Scientifique (CNRS) UMR 8619, Bat. 430, Université Paris Sud, Orsay Cedex, France.
Centre National de la Recherche Scientifique · FRInstitut de Biochimie et Biophysique Moléculaire et Cellulaire · FRUniversité Paris-Sud · FRÉcole Polytechnique · FRInserm · FRInstitut de génétique et de biologie moléculaire et cellulaire · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eukaryotic mRNA decay is a highly regulated process allowing cells to rapidly modulate protein production in response to internal and environmental cues. Mature translatable eukaryotic mRNAs are protected from fast and uncontrolled degradation in the cytoplasm by two cis-acting stability determinants: a methylguanosine (m(7)G) cap and a poly(A) tail at their 5' and 3' extremities, respectively. The hydrolysis of the m(7)G cap structure, known as decapping, is performed by the complex composed of the Dcp2 catalytic subunit and its partner Dcp1. The Dcp1-Dcp2 decapping complex has a low intrinsic activity and requires accessory factors to be fully active. Among these factors, Pat1 is considered to be a central scaffolding protein involved in Dcp2 activation but also in inhibition of translation initiation. Here, we present the structural and functional study of the C-terminal domain from S. cerevisiae Pat1 protein. We have identified two conserved and functionally important regions located at both extremities of the domain. The first region is involved in binding to Lsm1-7 complex. The second patch is specific for fungal proteins and is responsible for Pat1 interaction with Edc3. These observations support the plasticity of the protein interaction network involved in mRNA decay and show that evolution has extended the C-terminal alpha-helical domain from fungal Pat1 proteins to generate a new binding platform for protein partners.

Indexed as

Amino Acid SequenceCloning, MolecularGenetic Complementation TestHydrolysisMolecular ConformationMolecular Sequence DataPlasmidsProtein BindingProtein BiosynthesisProtein MultimerizationProtein Structure, TertiaryRNA-Binding ProteinsRNA, MessengerRNA StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsPAT1 protein, S cerevisiaeRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID24830408
PMCPMC4022514
OpenAlexW1963577021

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.