Evidence map›Paper›PMID 24828662›Full record

ArticleJournal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer2014

LKB1 Loss induces characteristic patterns of gene expression in human tumors associated with NRF2 activation and attenuation of PI3K-AKT.

Jacob M Kaufman, Joseph M Amann, Kyungho Park, Rajeswara Rao Arasada, Haotian Li, Yu Shyr, David P Carbone

Open access · bronzeAbstract read
In one paragraph

Article in Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

  1. Pooled it
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  3. Trial
  4. Article
  5. Targeting CRTC2 reversesProceedings of the National Academy of Sciences of the United States of America · 2026
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  8. Impact of Co-mutations and Transcriptional Signatures in Non-Small Cell Lung Cancer Patients Treated with Adagrasib in the KRYSTAL-1 Trial.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
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  9. Review
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  16. Molecular markers of metastatic disease in KRAS-mutant lung adenocarcinoma.Annals of oncology : official journal of the European Society for Medical Oncology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jacob M KaufmanDepartments of *Cancer Biology and §Biostatistics, Vanderbilt University, Nashville, Tennessee; †Department of Internal Medicine, James Thoracic Center, Ohio State University, Columbus, Ohio; and ‡University of Kentucky College of Dentistry, Lexington, Kentucky.
Joseph M Amann
Kyungho Park
Rajeswara Rao Arasada
Haotian Li
Yu Shyr
David P Carbone
The Ohio State University · USVanderbilt University · USUniversity of Kentucky · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI WANCAI YANG · 1985 to 2026
$132.3M
Molecular Signatures of Lung CancerU01CA114771 · NCI · VANDERBILT UNIVERSITY · PI CARBONE, DAVID P. · 2005 to 2010
$8.7M
NCI NIH HHS NCI U01CA114771NCI NIH HHS P30 CA016058NCI NIH HHS U01 CA114771
6 · The paper itself

Abstract

introductionInactivation of serine/threonine kinase 11 (STK11 or LKB1) is common in lung cancer, and understanding the pathways and phenotypes altered as a consequence will aid the development of targeted therapeutic strategies. Gene and protein expressions in a murine model of v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (Kras)-mutant lung cancer have been studied to gain insight into the biology of these tumors. However, the molecular consequences of LKB1 loss in human lung cancer have not been fully characterized.

methodsWe studied gene expression profiles associated with LKB1 loss in resected lung adenocarcinomas, non-small-cell lung cancer cell lines, and murine tumors. The biological significance of dysregulated genes was interpreted using gene set enrichment and transcription factor analyses and also by integration with somatic mutations and proteomic data.

resultsLoss of LKB1 is associated with consistent gene expression changes in resected human lung cancers and cell lines that differ substantially from the mouse model. Our analysis implicates novel biological features associated with LKB1 loss, including altered mitochondrial metabolism, activation of the nuclear respiratory factor 2 (NRF2) transcription factor by kelch-like ECH-associated protein 1 (KEAP1) mutations, and attenuation of the phosphatidylinositiol 3-kinase and v-akt murine thymoma viral oncogene homolog (PI3K/AKT) pathway. Furthermore, we derived a 16-gene classifier that accurately predicts LKB1 mutations and loss by nonmutational mechanisms. In vitro, transduction of LKB1 into LKB1-mutant cell lines results in attenuation of this signature.

conclusionLoss of LKB1 defines a subset of lung adenocarcinomas associated with characteristic molecular phenotypes and distinctive gene expression features. Studying these effects may improve our understanding of the biology of these tumors and lead to the identification of targeted treatment strategies.

Indexed as

TranscriptomeAdaptor Proteins, Signal TransducingAdenocarcinomaAMP-Activated Protein Kinase KinasesAMP-Activated Protein KinasesAnimalsAtaxia Telangiectasia Mutated ProteinsCarcinoma, Non-Small-Cell LungCell Line, TumorCytoskeletal ProteinsErbB ReceptorsGA-Binding Protein Transcription FactorHumansIntracellular Signaling Peptides and ProteinsKelch-Like ECH-Associated Protein 1Lung NeoplasmsAdaptor Proteins, Signal TransducingAMP-Activated Protein Kinase KinasesAMP-Activated Protein KinasesAtaxia Telangiectasia Mutated ProteinsATM protein, humanCytoskeletal ProteinsErbB ReceptorsGA-Binding Protein Transcription FactorIntracellular Signaling Peptides and ProteinsKEAP1 protein, humanKeap1 protein, mouseKelch-Like ECH-Associated Protein 1KRAS protein, humanNFE2L2 protein, humanNF-E2-Related Factor 2Phosphatidylinositol 3-KinaseProtein Serine-Threonine KinasesProto-Oncogene ProteinsProto-Oncogene Proteins c-aktProto-Oncogene Proteins p21(ras)ras ProteinsRNA, MessengerSTK11 protein, humanTumor Suppressor Protein p53

Identifiers

PMID24828662
PMCPMC4026179
OpenAlexW2083855694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.