Evidence map›Paper›PMID 24828507›Full record

ArticleThe Journal of biological chemistry2014

Reduced amino acid specificity of mammalian tyrosyl-tRNA synthetase is associated with elevated mistranslation of Tyr codons.

Medha Raina, Adil Moghal, Amanda Kano, Mathew Jerums, Paul D Schnier, Shun Luo, Rohini Deshpande, Pavel V Bondarenko, Henry Lin, Michael Ibba

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

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  11. Function and origin of mistranslation in distinct cellular contexts.Critical reviews in biochemistry and molecular biology · 2017
    Review
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Medha RainaFrom the Department of Microbiology, Ohio State Biochemistry Program, and Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210-1292 and.
Adil MoghalFrom the Department of Microbiology, Ohio State Biochemistry Program, and Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210-1292 and.
Amanda KanoAmgen Incorporated, Thousand Oaks, California 91320-1799.
Mathew JerumsAmgen Incorporated, Thousand Oaks, California 91320-1799.
Paul D SchnierAmgen Incorporated, Thousand Oaks, California 91320-1799.
Shun LuoAmgen Incorporated, Thousand Oaks, California 91320-1799.
Rohini DeshpandeAmgen Incorporated, Thousand Oaks, California 91320-1799.
Pavel V BondarenkoAmgen Incorporated, Thousand Oaks, California 91320-1799.
Henry LinAmgen Incorporated, Thousand Oaks, California 91320-1799.
Michael IbbaFrom the Department of Microbiology, Ohio State Biochemistry Program, and Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210-1292 and ibba.1@osu.edu.
Amgen (United States) · USThe Ohio State University · US

Funding

CHEMISTRY/BIOLOGY TRAINING GRANTT32GM008512 · NIGMS · OHIO STATE UNIVERSITY · PI PEI, DEHUA · 1996 to 2016
$3.9M
Cellular, molecular, and biochemical sciences training grantT32GM086252 · NIGMS · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH, MUSIER-FORSYTH, KARIN M · 2011 to 2020
$2.0M
NIGMS NIH HHS GM008512NIGMS NIH HHS GM086252NIGMS NIH HHS T32 GM008512NIGMS NIH HHS T32 GM086252
6 · The paper itself

Abstract

Quality control operates at different steps in translation to limit errors to approximately one mistranslated codon per 10,000 codons during mRNA-directed protein synthesis. Recent studies have suggested that error rates may actually vary considerably during translation under different growth conditions. Here we examined the misincorporation of Phe at Tyr codons during synthesis of a recombinant antibody produced in tyrosine-limited Chinese hamster ovary (CHO) cells. Tyr to Phe replacements were previously found to occur throughout the antibody at a rate of up to 0.7% irrespective of the identity or context of the Tyr codon translated. Despite this comparatively high mistranslation rate, no significant change in cellular viability was observed. Monitoring of Phe and Tyr levels revealed that changes in error rates correlated with changes in amino acid pools, suggesting that mischarging of tRNA(Tyr) with noncognate Phe by tyrosyl-tRNA synthetase was responsible for mistranslation. Steady-state kinetic analyses of CHO cytoplasmic tyrosyl-tRNA synthetase revealed a 25-fold lower specificity for Tyr over Phe as compared with previously characterized bacterial enzymes, consistent with the observed increase in translation error rates during tyrosine limitation. Functional comparisons of mammalian and bacterial tyrosyl-tRNA synthetase revealed key differences at residues responsible for amino acid recognition, highlighting differences in evolutionary constraints for translation quality control.

Indexed as

Amino Acid SubstitutionCodonProtein BiosynthesisAnimalsCHO CellsCricetinaeCricetulusTyrosine-tRNA LigaseCodonTyrosine-tRNA LigaseAminoacyl tRNA SynthesisAminoacyl tRNA SynthetaseProtein SynthesisTransfer RNA (tRNA)Translation

Identifiers

PMID24828507
PMCPMC4067211
OpenAlexW2035950984

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.