Evidence map›Paper›PMID 24828262›Full record

ArticleOphthalmic genetics2014

Next-generation sequencing revealed a novel mutation in the gene encoding the beta subunit of rod phosphodiesterase.

Sherry Shen, Tharikarn Sujirakul, Stephen H Tsang

Open access · greenAbstract read
In one paragraph

Article in Ophthalmic genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Correlation between B-scan optical coherence tomography, en face thickness map ring and hyperautofluorescent ring in retinitis pigmentosa patients.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2019
    Article
  4. Reprogramming the metabolome rescues retinal degeneration.Cellular and molecular life sciences : CMLS · 2018
    Review
  5. Article
  6. Genetic rescue models refute nonautonomous rod cell death in retinitis pigmentosa.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Article
  8. Article
  9. Novel mutations in PDE6B causing human retinitis pigmentosa.International journal of ophthalmology · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Sherry ShenCollege of Physicians & Surgeons, Columbia University , New York, NY , USA .
Tharikarn Sujirakul
Stephen H Tsang
Columbia University · USNew York Hospital Queens · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Toward mechanism- and gene-based therapies for retinal degenerationR01EY018213 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2008 to 2026
$6.6M
SHORT-TERM TRAINING: STUDENTS IN PROFESSIONAL SCHOOLST35HL007616 · NHLBI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI RUDOLPH L LEIBEL, Markus Y Mapara · 1985 to 2026
$4.4M
NCI NIH HHS 5P30CA013696NCI NIH HHS P30 CA013696NEI NIH HHS 5P30EY019007NEI NIH HHS P30 EY019007NEI NIH HHS R01 EY018213NEI NIH HHS R01EY018213NHLBI NIH HHS 5T35HL007616-33NHLBI NIH HHS T35 HL007616
6 · The paper itself

Abstract

purposeTo report the phenotypes caused by a novel mutation in the PDE6B gene in a family with two affected siblings and one affected cousin with a 2-year follow-up.

designThree patients from a family with a history of retinitis pigmentosa underwent clinical evaluations. The affected patients' DNA was analyzed using next-generation sequencing and segregation analyses were performed for the family.

settingEdward S. Harkness Eye Institute, New York Presbyterian Hospital.

participantsTwo siblings, one cousin, and five unaffected family members.

main outcome measuresMacular appearance assessed by funduscopy, autofluorescence imaging, spectral-domain optical coherence tomography and visual function assessed by electroretinography.

resultsThe proband, brother, and cousin had rod-cone degeneration with cystoid macular edema. Fundus autofluorescence showed hyperautofluorescent ring constriction over time. Spectral-domain optical coherence tomography revealed retinal pigment epithelium atrophy, loss of external limiting membrane, retinal layer thinning, and reduction in ellipsoid zone length over time. Next-generation whole exome sequencing revealed a homozygous c.1923_1969ins6del47 nonsense PDE6B mutation, which has not been previously described, that segregated with the disease in the family.

conclusionsThe homozygous PDE6B mutation causes retinitis pigmentosa. Acetazolamide treatment improved visual acuity but rod degeneration continued. Despite having the same mutation and living in the same environment, the proband's brother progressed at a faster rate starting at a younger age, suggesting that gene modifiers may influence the expressivity of the phenotype. Next-generation sequencing, used to discover this mutation, is a practical new technology that can detect novel disease-causing alleles, where previous arrayed primer extension (APEX) technology could not.

Indexed as

Codon, NonsenseHigh-Throughput Nucleotide SequencingAdolescentCarbonic Anhydrase InhibitorsConsanguinityCyclic Nucleotide Phosphodiesterases, Type 6DNA Mutational AnalysisElectroretinographyExomeFluorescein AngiographyGenetic Association StudiesHumansMaleMethazolamidePedigreePolymorphism, Single NucleotideCarbonic Anhydrase InhibitorsCodon, NonsenseCyclic Nucleotide Phosphodiesterases, Type 6MethazolamidePDE6B protein, humanFundus autofluorescencenext-generation sequencingoptical coherence tomographyPDE6retinitis pigmentosarod phosphodiesterasewhole exome sequencing

Identifiers

PMID24828262
PMCPMC4130765
OpenAlexW2166387413

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.