Evidence map›Paper›PMID 24827717›Full record

ArticleBiomedical and environmental sciences : BES2014

Genome wide association study: searching for genes underlying body mass index in the Chinese.

Fang Yang, Xiang Ding Chen, Li Jun Tan, Jie Shen, Ding You Li, Fang Zhang, Bao Yong Sha, Hong Wen Deng

Open access · greenAbstract read
In one paragraph

Article in Biomedical and environmental sciences : BES, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. TheFrontiers in genetics · 2022
    Article
  3. Article
  4. General control nonderepressible 2 deletion predisposes to asparaginase-associated pancreatitis in mice.American journal of physiology. Gastrointestinal and liver physiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Fang YangDepartment of Epidemiology and Biostatistics, School of Public Health, Central South University, Changsha 410078, Hunan, China.
Xiang Ding ChenLaboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha 410081, Hunan, China.
Li Jun TanLaboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha 410081, Hunan, China.
Jie ShenDepartment of Endocrinology, The Third Affiliated Hospital of Southern Medical University, Guangzhou 510630, Guangdong, China.
Ding You LiDepartment of Pediatrics, University of Missouri Kansas City School of Medicine, Division of Gastroenterology, Children's Mercy Hospital, Kansas City, Missouri 64108, USA.
Fang ZhangLaboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha 410081, Hunan, China.
Bao Yong ShaLaboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha 410081, Hunan, China.
Hong Wen DengLaboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha 410081, Hunan, China; Systematic Biomedicine Research Center, University of Shanghai for Science and Technology, Shanghai 200093, China; Center for Bioinformatics and Genomics, Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, LA 70112, USA.
Hunan Normal University · CNCentral South University · CNChildren's Mercy Hospital · USThird Affiliated Hospital of Southern Medical University · CNUniversity of Shanghai for Science and Technology · CN

Funding

ROBUST AND POWERFUL TEST OF CANDIDATE GENES TO BONE MASSR01AR050496 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2004 to 2013
$3.8M
Identification of Proteins Important for Male OsteoporosisR01AR057049 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2009 to 2013
$2.4M
NIAMS NIH HHS R01 AR050496NIAMS NIH HHS R01 AR057049
6 · The paper itself

Abstract

objectiveObesity is becoming a worldwide health problem. The genome wide association (GWA) study particularly for body mass index (BMI) has not been successfully conducted in the Chinese. In order to identify novel genes for BMI variation in the Chinese, an initial GWA study and a follow up replication study were performed.

methodsAffymetrix 500K SNPs were genotyped for initial GWA of 597 Northern Chinese. After quality control, 281,533 SNPs were included in the association analysis. Three SNPs were genotyped in a Southern Chinese replication sample containing 2 955 Chinese Han subjects. Association analyses were performed by Plink software.

resultsEight SNPs were significantly associated with BMI variation after false discovery rate (FDR) correction (P=5.45×10⁻⁷-7.26×10⁻⁶, FDR q=0.033-0.048). Two adjacent SNPs (rs4432245 & rs711906) in the eukaryotic translation initiation factor 2 alpha kinase 4 (EIF2AK4) gene were significantly associated with BMI (P=6.38×10⁻⁶ & 4.39×10⁻⁶, FDR q=0.048). In the follow-up replication study, we confirmed the associations between BMI and rs4432245, rs711906 in the EIF2AKE gene (P=0.03 & 0.01, respectively).

conclusionOur study suggests novel mechanisms for BMI, where EIF2AK4 has exerted a profound effect on the synthesis and storage of triglycerides and may impact on overall energy homeostasis associated with obesity. The minor allele frequencies for the two SNPs in the EIF2AK4 gene have marked ethnic differences between Caucasians and the Chinese. The association of the EIF2AK4 gene with BMI is suggested to be 'ethnic specific' in the Chinese.

Indexed as

Body Mass IndexAgedAsian PeopleChinaFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMiddle AgedObesityPolymorphism, Single NucleotideProtein Serine-Threonine KinasesEIF2AK4 protein, humanProtein Serine-Threonine KinasesBody mass indexEIF2AK4Genome wide associationReplication

Identifiers

PMID24827717
PMCPMC4537185
OpenAlexW196743391

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.