Evidence map›Paper›PMID 24827414›Full record

ArticleHelicobacter2014

Analysis of clinical isolates of Helicobacter pylori in Pakistan reveals high degrees of pathogenicity and high frequencies of antibiotic resistance.

Faisal Rasheed, Barry James Campbell, Hanafiah Alfizah, Andrea Varro, Rabaab Zahra, Yoshio Yamaoka, David Mark Pritchard

Abstract read
In one paragraph

Article in Helicobacter, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Observational
  5. Article
  6. Article
  7. Article
  8. Prevalence and etiology ofAnnals of medicine and surgery (2012) · 2023
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  9. Review
  10. Multidrug-ResistantAntibiotics (Basel, Switzerland) · 2022
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  11. Article
  12. Study on the value of antibiotic-resistant gene detection inExperimental and therapeutic medicine · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Novel virulence factorWorld journal of gastroenterology · 2020
    Review
  18. Journal of traditional and complementary medicine · 2020
    Article
  19. Article
  20. Genotype profiles ofTherapeutic advances in gastroenterology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Faisal RasheedDepartment of Gastroenterology, Institute of Translational Medicine, University of Liverpool, Liverpool, L69 3GE, UK; Department of Microbiology, Quaid-i-Azam University, Islamabad, 45320, Pakistan.
Barry James Campbell
Hanafiah Alfizah
Andrea Varro
Rabaab Zahra
Yoshio Yamaoka
David Mark Pritchard

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
NIDDK NIH HHS P30 DK056338NIDDK NIH HHS R01 DK062813
6 · The paper itself

Abstract

backgroundAntibiotic resistance in Helicobacter pylori contributes to failure in eradicating the infection and is most often due to point and missense mutations in a few key genes.

methodsThe antibiotic susceptibility profiles of H. pylori isolates from 46 Pakistani patients were determined by Etest. Resistance and pathogenicity genes were amplified, and sequences were analyzed to determine the presence of mutations.

resultsA high percentage of isolates (73.9%) were resistant to metronidazole (MTZ), with considerable resistance to clarithromycin (CLR; 47.8%) and amoxicillin (AML; 54.3%) also observed. Relatively few isolates were resistant to tetracycline (TET; 4.3%) or to ciprofloxacin (CIP; 13%). However, most isolates (n = 43) exhibited resistance to one or more antibiotics. MTZ-resistant isolates contained missense mutations in oxygen-independent NADPH nitroreductase (RdxA; 8 mutations found) and NADH flavin oxidoreductase (FrxA; 4 mutations found). In the 23S rRNA gene, responsible for CLR resistance, a new point mutation (A2181G) and 4 previously reported mutations were identified. Pathogenicity genes cagA, dupA, and vacA s1a/m1 were detected frequently in isolates which were also found to be resistant to MTZ, CLR, and AML. A high percentage of CagA and VacA seropositivity was also observed in these patients. Phylogenetic analysis of partial sequences showed uniform distribution of the 3' region of cagA throughout the tree.

conclusionsWe have identified H. pylori isolates in Pakistan which harbor pathogenicity genes and worrying antibiotic resistance profiles as a result of having acquired multiple point and missense mutations. H. pylori eradication regimens should therefore be reevaluated in this setting.

Indexed as

Drug Resistance, BacterialAdultAgedAged, 80 and overBacterial ProteinsBase SequenceClarithromycinCohort StudiesFemaleHelicobacter InfectionsHelicobacter pyloriHumansMaleMetronidazoleMicrobial Sensitivity TestsMiddle AgedBacterial ProteinsClarithromycinMetronidazole23S rRNA geneantibiotic resistancecagAclarithromycin resistanceHelicobacter pylori infectionmetronidazole resistance

Identifiers

PMID24827414
PMCPMC4162849

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.