Evidence map›Paper›PMID 24827138›Full record

ArticleHuman mutation2014

Structural genomic variation as risk factor for idiopathic recurrent miscarriage.

Liina Nagirnaja, Priit Palta, Laura Kasak, Kristiina Rull, Ole B Christiansen, Henriette S Nielsen, Rudi Steffensen, Tõnu Esko, Maido Remm, Maris Laan

Open access · hybridAbstract read
In one paragraph

Article in Human mutation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

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  9. Recurrent Pregnancy Loss and Concealed Long-QT Syndrome.Journal of the American Heart Association · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 5 countries.

Liina NagirnajaHuman Molecular Genetics Research Group, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Priit Palta
Laura Kasak
Kristiina Rull
Ole B Christiansen
Henriette S Nielsen
Rudi Steffensen
Tõnu Esko
Maido Remm
Maris Laan
University of Tartu · EECopenhagen University Hospital · DKAalborg University Hospital · DKBroad Institute · USEstonian Biocentre · EE

Funding

Wellcome Trust 070191/Z/03/A
6 · The paper itself

Abstract

Recurrent miscarriage (RM) is a multifactorial disorder with acknowledged genetic heritability that affects ∼3% of couples aiming at childbirth. As copy number variants (CNVs) have been shown to contribute to reproductive disease susceptibility, we aimed to describe genome-wide profile of CNVs and identify common rearrangements modulating risk to RM. Genome-wide screening of Estonian RM patients and fertile controls identified excessive cumulative burden of CNVs (5.4 and 6.1 Mb per genome) in two RM cases possibly increasing their individual disease risk. Functional profiling of all rearranged genes within RM study group revealed significant enrichment of loci related to innate immunity and immunoregulatory pathways essential for immune tolerance at fetomaternal interface. As a major finding, we report a multicopy duplication (61.6 kb) at 5p13.3 conferring increased maternal risk to RM in Estonia and Denmark (meta-analysis, n = 309/205, odds ratio = 4.82, P = 0.012). Comparison to Estonian population-based cohort (total, n = 1000) confirmed the risk for Estonian female cases (P = 7.9 × 10(-4) ). Datasets of four cohorts from the Database of Genomic Variants (total, n = 5,846 subjects) exhibited similar low duplication prevalence worldwide (0.7%-1.2%) compared to RM cases of this study (6.6%-7.5%). The CNV disrupts PDZD2 and GOLPH3 genes predominantly expressed in placenta and it may represent a novel risk factor for pregnancy complications.

Indexed as

DNA Copy Number VariationsGenome, HumanAbortion, HabitualAdaptor Proteins, Signal TransducingBase SequenceCell Adhesion MoleculesChromosome DuplicationDatabases, GeneticDenmarkEstoniaFemaleFetusGenetic LociGenetic Predisposition to DiseaseHumansImmune ToleranceAdaptor Proteins, Signal TransducingCell Adhesion MoleculesGOLPH3 protein, humanMembrane ProteinsNeoplasm ProteinsPDZD2 protein, humanfetomaternal interfaceGOLPH3immune dysfunctionPDZD2placentarecurrent miscarriage

Identifiers

PMID24827138
PMCPMC4285182
OpenAlexW2029154262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.