Evidence map›Paper›PMID 24826939›Full record

ArticleProteomics2014

Site-specific human histone H3 methylation stability: fast K4me3 turnover.

Yupeng Zheng, Jeremiah D Tipton, Paul M Thomas, Neil L Kelleher, Steve M M Sweet

Open access · greenAbstract read
In one paragraph

Article in Proteomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
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  6. Epigenetic control and manipulation of neuronal maturation timing.Current opinion in genetics & development · 2024
    Review
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  15. Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation.Biochimica et biophysica acta. Gene regulatory mechanisms · 2020
    Review
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yupeng ZhengDepartments of Chemistry and Molecular Biosciences, Chemistry of Life Processes Institute, Northwestern University, Evanston, IL, 60208, USA.
Jeremiah D Tipton
Paul M Thomas
Neil L Kelleher
Steve M M Sweet
Northwestern University · US

Funding

TRANS-NETWORK PROJECTSU54CA143869 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI KOPP, PETER ANDREAS · 2009 to 2013
$12.8M
Eukaryotic Post-Translational ModificationsR01GM067193 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KELLEHER, NEIL L · 2003 to 2015
$4.0M
Medical Research Council G1100257Medical Research Council MRC-G1100257NCI NIH HHS U54 CA 143869NCI NIH HHS U54 CA143869NIGMS NIH HHS R01 GM067193NIGMS NIH HHS R01 GM 067193-09
6 · The paper itself

Abstract

We employ stable-isotope labeling and quantitative mass spectrometry to track histone methylation stability. We show that H3 trimethyl K9 and K27 are slow to be established on new histones and slow to disappear from old histones, with half-lives of multiple cell divisions. By contrast, the transcription-associated marks K4me3 and K36me3 turn over far more rapidly, with half-lives of 6.8 h and 57 h, respectively. Inhibition of demethylases increases K9 and K36 methylation, with K9 showing the largest and most robust increase. We interpret different turnover rates in light of genome-wide localization data and transcription-dependent nucleosome rearrangements proximal to the transcription start site.

Indexed as

ChromatinGene Expression RegulationHeLa CellsHistonesHumansIsotope LabelingLysineMethylationProtein StabilityChromatinHistonesLysineCell biologyChromatinDemethylationHeterochromatinMethylation turnoverSILACTranscription

Identifiers

PMID24826939
PMCPMC4184988
OpenAlexW1972183424

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.