Evidence map›Paper›PMID 24825899›Full record

ArticleThe Journal of biological chemistry2014

Study of the protein complex, pore diameter, and pore-forming activity of the Borrelia burgdorferi P13 porin.

Iván Bárcena-Uribarri, Marcus Thein, Mariam Barbot, Eulalia Sans-Serramitjana, Mari Bonde, Reinhard Mentele, Friedrich Lottspeich, Sven Bergström, Roland Benz

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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  3. Identification of amino acid domains ofFrontiers in cellular and infection microbiology · 2022
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  4. Article
  5. Protein Secretion in Spirochetes.Microbiology spectrum · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Iván Bárcena-UribarriFrom the Rudolf-Virchow-Center, Deutsche Forschungsgemeinschaft Research Center for Experimental Biomedicine, University of Würzburg, Versbacher Strasse 9, D-97078 Würzburg, Germany, School of Engineering and Science, Jacobs University Bremen, Campusring 1, D-28759 Bremen, Germany, i.barcenauribarri@jacobs-university.de.
Marcus TheinFrom the Rudolf-Virchow-Center, Deutsche Forschungsgemeinschaft Research Center for Experimental Biomedicine, University of Würzburg, Versbacher Strasse 9, D-97078 Würzburg, Germany.
Mariam BarbotFrom the Rudolf-Virchow-Center, Deutsche Forschungsgemeinschaft Research Center for Experimental Biomedicine, University of Würzburg, Versbacher Strasse 9, D-97078 Würzburg, Germany.
Eulalia Sans-SerramitjanaFrom the Rudolf-Virchow-Center, Deutsche Forschungsgemeinschaft Research Center for Experimental Biomedicine, University of Würzburg, Versbacher Strasse 9, D-97078 Würzburg, Germany.
Mari BondeDepartment of Molecular Biology, Umeå University, S-90187 Umeå, Sweden, and.
Reinhard MenteleMax-Planck Institute of Biochemistry, Protein Analysis Department, Am Klopferspitz 18, D-82152 Martinsried, Germany.
Friedrich LottspeichMax-Planck Institute of Biochemistry, Protein Analysis Department, Am Klopferspitz 18, D-82152 Martinsried, Germany.
Sven BergströmDepartment of Molecular Biology, Umeå University, S-90187 Umeå, Sweden, and.
Roland BenzFrom the Rudolf-Virchow-Center, Deutsche Forschungsgemeinschaft Research Center for Experimental Biomedicine, University of Würzburg, Versbacher Strasse 9, D-97078 Würzburg, Germany, School of Engineering and Science, Jacobs University Bremen, Campusring 1, D-28759 Bremen, Germany.
Deutsche Forschungsgemeinschaft · DEMax Planck Institute of Biochemistry · DEUmeå University · SEConstructor University · DEUniversity of Würzburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

P13 is one of the major outer membrane proteins of Borrelia burgdorferi. Previous studies described P13 as a porin. In the present study some structure and function aspects of P13 were studied. P13 showed according to lipid bilayer studies a channel-forming activity of 0.6 nanosiemens in 1 m KCl. Single channel and selectivity measurements demonstrated that P13 had no preference for either cations or anions and showed no voltage-gating up to ±100 mV. Blue native polyacrylamide gel electrophoresis was used to isolate and characterize the P13 protein complex in its native state. The complex had a high molecular mass of about 300 kDa and was only composed of P13 monomers. The channel size was investigated using non-electrolytes revealing an apparent diameter of about 1.4 nm with a 400-Da molecular mass cut-off. Multichannel titrations with different substrates reinforced the idea that P13 forms a general diffusion channel. The identity of P13 within the complex was confirmed by second dimension SDS-PAGE, Western blotting, mass spectrometry, and the use of a p13 deletion mutant strain. The results suggested that P13 is the protein responsible for the 0.6-nanosiemens pore-forming activity in the outer membrane of B. burgdorferi.

Indexed as

Borrelia burgdorferiBacterial ProteinsDose-Response Relationship, DrugIon Channel GatingLipid BilayersPorinsPorositySaltsSubstrate SpecificityBacterial ProteinsLipid BilayersPorinsSaltsAntibioticsAntigenBacterial PathogenesisBlack Lipid BilayerBlue Native PAGEMembrane ProteinMembrane Transport

Identifiers

PMID24825899
PMCPMC4081907
OpenAlexW1964433194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.